Detailed information NTG1096064

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACMXYJ_RS05830
• Genome accession: NZ_CP180480
• Coordinates: 1275270..1276610 (-)
• Length: 446 a.a.
• NCBI ID: WP_415759084.1
• Uniprot ID: -
• Organism: Pseudomonas sp. LT1P18
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1270270..1281610

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMXYJ_RS05815	-	1270643..1273699 (+)	3057	WP_415759081.1	pilus assembly protein	-
ACMXYJ_RS05820	-	1273714..1274109 (+)	396	WP_415759082.1	type IV pilin protein	-
ACMXYJ_RS05825	thiO	1274166..1275266 (+)	1101	WP_415759083.1	glycine oxidase ThiO	-
ACMXYJ_RS05830	pilR	1275270..1276610 (-)	1341	WP_415759084.1	sigma-54-dependent transcriptional regulator	Regulator
ACMXYJ_RS05835	pilS	1276613..1278202 (-)	1590	WP_415759085.1	sensor histidine kinase	Regulator
ACMXYJ_RS05840	-	1278192..1278425 (-)	234	WP_008154904.1	PP0621 family protein	-
ACMXYJ_RS05845	-	1278548..1279570 (-)	1023	WP_150658187.1	outer membrane protein assembly factor BamD	-
ACMXYJ_RS05850	rluD	1279722..1280684 (+)	963	WP_046048807.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
ACMXYJ_RS05855	pgeF	1280681..1281406 (+)	726	WP_415759086.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49714.00 Da
• Isoelectric Point: 6.5105

>NTDB_id=1096064 ACMXYJ_RS05830 WP_415759084.1 1275270..1276610(-) (pilR) [Pseudomonas sp. LT1P18]
MSPRQKVLIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLSRETFDLCLTDMRLPDGTGLELVQHIQQRHPNVPVA
MITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVSSALRLPAPGGTGIAIDRRLLGDSLPMRALRKHIDKLARSQAPV
YISGESGSGKELVARLIHEQGPRANQPFIPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADL
PLAMQVKLLRAIQEKAVRGVGEQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPPLRERRDDIESLASH
VLKRLAISTGQPAAKLHPQALDALKSYRFPGNVRELENVLERAHTLCENKQIEASDLRLAEGNCNPEGGVPDLTQIDNLE
DYLENVERNLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=1096064 ACMXYJ_RS05830 WP_415759084.1 1275270..1276610(-) (pilR) [Pseudomonas sp. LT1P18]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGGACGGAT
GAAACTCGACACCTTCAGTGCCCGCAACCTCGGCGAAGCCCAGGCCCTGCTGTCGCGAGAAACGTTCGACCTGTGCCTGA
CCGATATGCGCCTGCCGGACGGTACCGGCCTTGAGCTGGTGCAGCACATCCAGCAACGCCACCCAAATGTACCGGTGGCA
ATGATCACCGCTTACGGCAGCCTGGAAACGGCGATCAACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAAACCGGT
GGACCTCACTCGCCTGCGGGAACTGGTCAGCAGCGCGCTTCGGTTGCCTGCGCCGGGCGGTACCGGCATCGCCATCGATC
GCCGGCTGCTGGGTGATTCACTGCCCATGCGCGCTCTGCGCAAACACATCGACAAACTGGCCCGCAGCCAGGCGCCGGTG
TACATCAGCGGAGAATCCGGCAGTGGCAAGGAATTGGTCGCGCGACTGATCCATGAGCAAGGCCCCCGCGCCAACCAACC
GTTTATCCCGGTCAATTGCGGGGCGATTCCGTCGGAATTGATGGAGAGCGAGTTTTTCGGGCATCGCAAAGGCAGCTTCA
GCGGCGCCATCGAAGACAAACCCGGACTGTTCCAGGCGGCCCATGGCGGCACCCTGTTCCTCGACGAAGTGGCTGATTTA
CCGCTGGCGATGCAGGTCAAACTGCTACGGGCAATACAGGAAAAAGCCGTTCGCGGTGTCGGCGAGCAGCAGGAAACCGT
GGTCGATGTGCGTATTCTTTGCGCCACCCATAAAGACCTCGACGCCGAAGTCGCCGCCGAACGTTTTCGCCAGGATTTGT
ACTACCGGTTGAACGTCATCGAACTACGGGTGCCGCCCTTGCGCGAACGCCGTGACGACATCGAATCCCTCGCCAGCCAT
GTGCTCAAACGCCTGGCCATCAGCACCGGCCAACCCGCCGCAAAACTCCACCCCCAAGCCCTCGATGCGCTGAAAAGCTA
TCGCTTCCCCGGCAATGTGCGGGAACTGGAGAATGTGCTCGAACGGGCGCACACGTTGTGCGAAAACAAACAAATTGAAG
CCAGCGACCTGCGACTGGCCGAAGGCAACTGCAACCCGGAAGGCGGTGTGCCGGACCTGACACAGATCGACAACCTGGAA
GACTACCTGGAAAACGTCGAACGCAACCTTATCCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACGGCGGCGGCTCA
GCGGTTGAATCTTTCATTCCGGTCGATGCGCTACAGGCTCAAGAAACTTGGATTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.007	99.327	0.785
pilR	Acinetobacter baumannii strain A118	49.673	100	0.511