Detailed information NTG1096047

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACMXYH_RS28020
• Genome accession: NZ_CP180479
• Coordinates: 6070633..6071973 (+)
• Length: 446 a.a.
• NCBI ID: WP_415765586.1
• Uniprot ID: -
• Organism: Pseudomonas sp. ZB1P45
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6065633..6076973

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMXYH_RS27995	pgeF	6065840..6066565 (-)	726	WP_415765583.1	peptidoglycan editing factor PgeF	-
ACMXYH_RS28000	rluD	6066562..6067524 (-)	963	WP_046048807.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
ACMXYH_RS28005	-	6067676..6068698 (+)	1023	WP_415765584.1	outer membrane protein assembly factor BamD	-
ACMXYH_RS28010	-	6068821..6069054 (+)	234	WP_008037883.1	PP0621 family protein	-
ACMXYH_RS28015	pilS	6069044..6070630 (+)	1587	WP_415765585.1	sensor histidine kinase	Regulator
ACMXYH_RS28020	pilR	6070633..6071973 (+)	1341	WP_415765586.1	sigma-54-dependent transcriptional regulator	Regulator
ACMXYH_RS28025	thiO	6072118..6073218 (-)	1101	WP_415765588.1	glycine oxidase ThiO	-
ACMXYH_RS28030	-	6073275..6073676 (-)	402	WP_415765590.1	type IV pilin protein	-
ACMXYH_RS28035	-	6073691..6076810 (-)	3120	WP_415765591.1	pilus assembly protein	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49710.95 Da
• Isoelectric Point: 6.5105

>NTDB_id=1096047 ACMXYH_RS28020 WP_415765586.1 6070633..6071973(+) (pilR) [Pseudomonas sp. ZB1P45]
MSPRQKVLIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLSRETFDLCLTDMRLPDGTGLELVQHIQQRHPNVPVA
MITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVSSALRLPAPGGTGVAIDRRLLGDSPPMRALRKHIDKLARSQAPV
YISGESGSGKELVARLIHEQGPRASQPFIPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADL
PLAMQVKLLRAIQEKAVRGVGEQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPPLRERRDDIESLASH
VLKRLAINTGQPAAKLHPQALDALKNYRFPGNVRELENVLERAHTLCENKQIEASDLRLAEGNCNPEGGVPDLTQIDNLE
DYLENVERNLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=1096047 ACMXYH_RS28020 WP_415765586.1 6070633..6071973(+) (pilR) [Pseudomonas sp. ZB1P45]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGGCCGGAT
GAAACTCGACACCTTCAGTGCCCGCAACCTCGGCGAAGCCCAGGCCCTGCTCTCGCGAGAGACCTTCGACCTGTGCCTCA
CCGACATGCGCTTGCCGGACGGCACCGGCCTTGAGCTGGTGCAACACATCCAGCAACGCCACCCAAACGTACCCGTGGCA
ATGATCACCGCTTATGGCAGCCTGGAAACGGCGATCAACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAAACCGGT
GGACCTCACTCGCCTGCGGGAACTGGTCAGCAGCGCGCTTCGGTTGCCTGCGCCGGGCGGCACCGGCGTCGCCATCGATC
GCCGGCTGCTGGGCGATTCACCGCCCATGCGCGCCTTGCGCAAACACATCGACAAACTAGCCCGCAGCCAAGCGCCGGTG
TACATCAGCGGCGAATCCGGCAGCGGCAAGGAGTTGGTCGCGCGACTGATCCATGAGCAAGGGCCGCGCGCCAGCCAACC
GTTTATCCCGGTCAATTGCGGGGCGATTCCGTCAGAATTGATGGAGAGCGAATTTTTCGGGCATCGCAAAGGCAGCTTCA
GCGGTGCCATCGAAGACAAACCTGGACTGTTCCAGGCGGCCCATGGCGGCACCCTGTTTCTCGACGAAGTGGCTGATTTG
CCGCTGGCGATGCAGGTCAAACTGCTACGGGCAATACAGGAGAAAGCCGTTCGCGGTGTCGGCGAGCAACAGGAAACCGT
GGTCGATGTGCGTATCCTTTGCGCCACCCACAAAGACCTCGACGCCGAAGTCGCCGCCGAACGCTTTCGCCAGGATTTGT
ACTACCGGTTGAACGTGATCGAACTAAGGGTGCCGCCCTTGCGCGAACGCCGGGACGACATCGAATCCCTCGCCAGCCAC
GTGCTCAAACGCTTGGCCATCAACACTGGCCAACCCGCCGCAAAACTCCACCCCCAAGCCCTCGACGCGCTGAAAAACTA
TCGCTTCCCCGGCAATGTGCGGGAACTGGAGAACGTGCTCGAACGGGCTCACACGTTGTGCGAAAACAAACAAATTGAAG
CCAGCGACCTGCGACTGGCCGAAGGCAACTGCAACCCGGAAGGTGGTGTGCCGGACCTGACGCAGATCGACAACCTGGAA
GACTACCTGGAAAACGTCGAACGCAACCTTATCCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACGGCGGCGGCTCA
ACGGTTGAATCTTTCATTCCGGTCGATGCGTTACAGGCTCAAGAAACTTGGATTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.458	99.327	0.789
pilR	Acinetobacter baumannii strain A118	48.802	100	0.502