Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACMXYH_RS08535 Genome accession   NZ_CP180479
Coordinates   1884761..1886983 (+) Length   740 a.a.
NCBI ID   WP_415766827.1    Uniprot ID   -
Organism   Pseudomonas sp. ZB1P45     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1879761..1891983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYH_RS08510 - 1880771..1881430 (+) 660 WP_415766825.1 transglutaminase-like domain-containing protein -
  ACMXYH_RS08515 - 1881474..1882097 (+) 624 WP_415757456.1 glutathione S-transferase family protein -
  ACMXYH_RS08520 - 1882231..1883163 (+) 933 WP_415766826.1 ABC transporter ATP-binding protein -
  ACMXYH_RS08525 - 1883160..1883939 (+) 780 WP_129437484.1 ABC transporter permease -
  ACMXYH_RS08530 - 1884107..1884625 (-) 519 WP_129437482.1 DUF2062 domain-containing protein -
  ACMXYH_RS08535 comA 1884761..1886983 (+) 2223 WP_415766827.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACMXYH_RS08540 exbB 1887082..1887717 (+) 636 WP_046049059.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACMXYH_RS08545 - 1887714..1888145 (+) 432 WP_046049060.1 ExbD/TolR family protein -
  ACMXYH_RS08550 lpxK 1888145..1889155 (+) 1011 WP_415766828.1 tetraacyldisaccharide 4'-kinase -
  ACMXYH_RS08555 - 1889181..1889366 (+) 186 WP_007945752.1 Trm112 family protein -
  ACMXYH_RS08560 kdsB 1889363..1890127 (+) 765 WP_415766829.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACMXYH_RS08565 - 1890127..1890591 (+) 465 WP_415766830.1 low molecular weight protein-tyrosine-phosphatase -
  ACMXYH_RS08570 murB 1890588..1891607 (+) 1020 WP_415766831.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 81581.93 Da        Isoelectric Point: 10.1269

>NTDB_id=1096032 ACMXYH_RS08535 WP_415766827.1 1884761..1886983(+) (comA) [Pseudomonas sp. ZB1P45]
MRTGMMALALGLLILRFLPVLPPVWLWMLLPVIGLMLLPFRSYPLAFFLFGFSWAGANAQWALDDRLPMSLDGETRWVEG
RVTGLPQNNEAVVRFELADARSRHGKVPQRIRLAWYDGPPVNSGEHWRLAVKLKRPAGLLNPHAFDYDAWLLAQRIGATG
TVKDGQRLKEAQWAWRDGIRQRLQAVDAQGRTGALTALVLGDGAGLSREDWEVLQDTGTVHLLVISGQHIGLLAGLVYLL
IAGLARYGLWPKRLPWLPWACGLAFAAALGYGLLAGFEVPVRRACMMIGLVLLWRLRFRHLGAWWPLLLALDGVLLLDPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPLLLVLGLPISLSGPVANLLAVPWISLVVLPPAL
LGTLLLPLPYVGEGLLWLAGGLIDLLFKGLTLMAGCLPAWVPVAIPLWIWALGTLGAFLLLIPRGVPFRSLGWPMLLLLV
FPPRQVLPEGIAEVWQLDVGQGLAILVRTRHHALLYDTGPRFGDFDLGERVVLPTLRKLGVNGLDLMLISHADADHAGGA
RAVANGLPVKRVVSGDPLALPAELQAEGCESGKQWIWDDVRFQLWQWSSASDSNQKSCVLQIEANGERLLLTGDIDAAAE
RALLDSPLAVTTDWLQAPHHGSRSSSSMALLAALQPQAVLISRGQGNSFGHPHPTIMARYRKRGISIHDSAEQGAIRLQL
GRFKPPWTMRQERRFWRSAQ

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=1096032 ACMXYH_RS08535 WP_415766827.1 1884761..1886983(+) (comA) [Pseudomonas sp. ZB1P45]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGTCTGTTGATCCTGCGTTTTTTACCGGTATTACCGCCGGTCTGGTTATG
GATGTTGCTGCCGGTAATCGGTTTGATGTTGCTGCCGTTTCGCAGCTATCCACTGGCATTTTTCCTGTTCGGCTTCAGTT
GGGCAGGCGCGAATGCACAGTGGGCGCTGGATGATCGGCTGCCGATGAGCCTCGATGGCGAAACCCGTTGGGTCGAAGGT
CGGGTGACGGGATTGCCCCAGAACAATGAGGCCGTCGTGCGTTTCGAGTTGGCGGACGCCCGGTCGCGACACGGCAAGGT
GCCGCAACGGATACGCCTGGCCTGGTATGACGGGCCGCCGGTCAACAGCGGCGAACATTGGCGACTGGCGGTCAAGTTGA
AGCGTCCTGCGGGGCTGCTTAATCCCCATGCCTTCGATTACGACGCCTGGCTGTTGGCGCAACGTATCGGCGCTACCGGG
ACGGTCAAGGATGGCCAGCGACTCAAGGAAGCCCAATGGGCTTGGCGCGACGGCATCCGTCAGCGCTTGCAGGCCGTGGA
TGCCCAGGGGCGAACGGGTGCGCTGACGGCGTTGGTGCTGGGGGACGGCGCCGGACTGAGTCGCGAAGACTGGGAGGTGC
TGCAAGACACCGGCACCGTCCATCTGTTGGTGATTTCCGGACAACACATCGGGTTGTTGGCAGGGCTGGTGTATCTGTTG
ATCGCCGGGCTGGCCCGTTATGGCCTGTGGCCGAAACGCTTGCCTTGGCTGCCGTGGGCCTGTGGACTGGCGTTCGCGGC
CGCTCTCGGTTATGGGCTGCTGGCCGGTTTCGAGGTGCCGGTGCGGCGGGCCTGCATGATGATCGGTCTGGTGCTGTTGT
GGCGCCTGCGATTTCGTCACCTCGGCGCCTGGTGGCCGCTGTTGCTGGCGCTCGACGGTGTTTTGCTGCTGGATCCGCTG
GCGAGTCTGCAACCGGGTTTTTGGCTGTCGTTCGCGGCGGTGGCGGTGTTGATCTTCACCTTCGGTGGTCGGCTGGGCCC
ATGGCGTTGGTGGCAAACGTGGACCCGCGCCCAATGGCTGATCGCGATTGGTCTGTGCCCGTTGCTGCTGGTGCTCGGGT
TGCCGATCAGTCTCAGCGGGCCGGTGGCCAATTTGCTCGCGGTGCCGTGGATCAGTCTGGTGGTGCTGCCTCCGGCACTG
CTGGGTACGTTGCTTTTACCCCTTCCTTACGTGGGCGAAGGGTTGCTGTGGTTGGCAGGAGGTTTGATCGACCTCTTGTT
CAAGGGCCTGACGCTGATGGCCGGGTGCTTGCCCGCGTGGGTGCCGGTGGCCATCCCGTTGTGGATATGGGCACTCGGCA
CACTCGGTGCCTTTCTACTATTGATACCTCGAGGTGTGCCGTTTCGCTCGTTGGGTTGGCCGATGCTGCTGTTGCTGGTT
TTTCCACCCAGGCAGGTCTTGCCTGAAGGCATCGCCGAAGTCTGGCAGCTGGATGTCGGCCAGGGTTTGGCAATCCTGGT
GCGCACCCGTCATCACGCACTGTTATATGACACCGGGCCACGTTTCGGCGATTTCGACCTGGGTGAGCGGGTGGTGCTGC
CGACATTACGCAAGCTGGGCGTGAATGGACTCGATTTGATGCTGATCAGCCATGCCGACGCCGATCATGCGGGCGGCGCC
CGGGCCGTTGCCAATGGCCTGCCGGTGAAACGGGTGGTCAGTGGCGATCCCCTGGCGCTGCCGGCCGAGTTGCAGGCAGA
AGGCTGCGAGAGTGGCAAGCAATGGATCTGGGATGATGTGAGGTTCCAGCTCTGGCAATGGTCTTCGGCCAGCGACAGCA
ATCAAAAATCCTGCGTCCTGCAGATAGAAGCCAACGGTGAGCGTCTGTTATTGACCGGTGATATAGATGCCGCAGCCGAG
CGGGCGCTGCTCGACAGTCCACTGGCCGTCACCACCGATTGGTTGCAGGCGCCGCACCACGGCAGTCGCAGTTCGTCATC
GATGGCGTTGCTTGCCGCGTTGCAGCCCCAAGCGGTGTTGATCTCCCGCGGTCAGGGCAATTCATTCGGTCATCCCCATC
CCACGATCATGGCGCGCTATCGAAAGCGCGGCATATCGATCCATGACAGCGCCGAGCAGGGTGCCATCCGTCTGCAACTG
GGACGCTTCAAGCCGCCATGGACGATGCGTCAAGAACGGCGTTTCTGGCGCTCTGCGCAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-681)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(23-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.687

96.757

0.616
  comA Ralstonia pseudosolanacearum GMI1000

33.61

100

0.382

Multiple sequence alignment