Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACMXYH_RS08540 Genome accession   NZ_CP180479
Coordinates   1887082..1887717 (+) Length   211 a.a.
NCBI ID   WP_046049059.1    Uniprot ID   A0A0Q6QTF6
Organism   Pseudomonas sp. ZB1P45     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1882082..1892717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYH_RS08520 - 1882231..1883163 (+) 933 WP_415766826.1 ABC transporter ATP-binding protein -
  ACMXYH_RS08525 - 1883160..1883939 (+) 780 WP_129437484.1 ABC transporter permease -
  ACMXYH_RS08530 - 1884107..1884625 (-) 519 WP_129437482.1 DUF2062 domain-containing protein -
  ACMXYH_RS08535 comA 1884761..1886983 (+) 2223 WP_415766827.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACMXYH_RS08540 exbB 1887082..1887717 (+) 636 WP_046049059.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACMXYH_RS08545 - 1887714..1888145 (+) 432 WP_046049060.1 ExbD/TolR family protein -
  ACMXYH_RS08550 lpxK 1888145..1889155 (+) 1011 WP_415766828.1 tetraacyldisaccharide 4'-kinase -
  ACMXYH_RS08555 - 1889181..1889366 (+) 186 WP_007945752.1 Trm112 family protein -
  ACMXYH_RS08560 kdsB 1889363..1890127 (+) 765 WP_415766829.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACMXYH_RS08565 - 1890127..1890591 (+) 465 WP_415766830.1 low molecular weight protein-tyrosine-phosphatase -
  ACMXYH_RS08570 murB 1890588..1891607 (+) 1020 WP_415766831.1 UDP-N-acetylmuramate dehydrogenase -
  ACMXYH_RS08575 - 1891852..1892322 (+) 471 WP_008152370.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22928.09 Da        Isoelectric Point: 7.3616

>NTDB_id=1096033 ACMXYH_RS08540 WP_046049059.1 1887082..1887717(+) (exbB) [Pseudomonas sp. ZB1P45]
MWELVKSGGWMMIPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRANSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLNGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1096033 ACMXYH_RS08540 WP_046049059.1 1887082..1887717(+) (exbB) [Pseudomonas sp. ZB1P45]
GTGTGGGAATTGGTCAAATCCGGCGGATGGATGATGATACCGATCATTCTGAGTTCCATCGCAGCCATGGCGATCGTCGC
CGAACGTCTCTGGACCCTGCGAGCCAGCCGTGTGACCCCGGAGCATTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AACAACTCAATAAAGACAAACTCAAGGAACTGCGCGCCAACTCGCCGTTGGGCGAGATCCTGGCTGCTGGCCTGGCCAAC
TCCAGGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGAGTGATTCACGAGCTCGAACGCTATAT
CAACGCGTTGGGCACCATCGCCGCCATGGCCCCGTTGCTGGGGCTGTTGGGGACGGTATTGGGCATGATCGATATCTTCA
GCGCATTCATGGGGTCGGGCATGACCACCAACGCCGCCGTTTTGGCCGGTGGTATCTCCAAGGCGCTGATAACCACCGCT
GCAGGCCTGATGGTTGGTATCCCGTCGGTATTCTTCCACCGTTTCCTGCAACGCCGGATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAAGTGGTACAGGGCGATCGTGATGTTGACCTGAATGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q6QTF6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844

Multiple sequence alignment