Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACMYQ1_RS19215 Genome accession   NZ_CP180478
Coordinates   4398383..4399093 (-) Length   236 a.a.
NCBI ID   WP_219250631.1    Uniprot ID   -
Organism   Shewanella oncorhynchi strain XWfb1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4393383..4404093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMYQ1_RS19200 (ACMYQ1_19200) - 4394181..4396190 (+) 2010 WP_415775398.1 fumarate reductase flavoprotein subunit -
  ACMYQ1_RS19205 (ACMYQ1_19205) - 4396187..4396912 (+) 726 WP_105251338.1 fumarate reductase iron-sulfur subunit -
  ACMYQ1_RS19210 (ACMYQ1_19210) - 4397141..4398208 (+) 1068 WP_105251337.1 porin -
  ACMYQ1_RS19215 (ACMYQ1_19215) ssb 4398383..4399093 (-) 711 WP_219250631.1 single-stranded DNA-binding protein Machinery gene
  ACMYQ1_RS19220 (ACMYQ1_19220) - 4399202..4400569 (-) 1368 WP_168825599.1 MFS transporter -
  ACMYQ1_RS19225 (ACMYQ1_19225) uvrA 4400973..4403855 (+) 2883 WP_415775399.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 25399.96 Da        Isoelectric Point: 5.2341

>NTDB_id=1096022 ACMYQ1_RS19215 WP_219250631.1 4398383..4399093(-) (ssb) [Shewanella oncorhynchi strain XWfb1]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVLFGKLAEITGEYLRKGSQVYLE
GKLQTRKWKDQSGQDRYSTEVVIDQSGSMQMLGSRGQGGQAQGAPMGGGMPQNAGYQSAPQQAAPAQNQYAPAPQAAPAY
QAPAQQQYAPPAPTQQQGYGQPQAQQPQQGGYAPKPQAAPAPAYQAPAAPAQRPAPQPQQNFTPDLDDGWDDDIPF

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1096022 ACMYQ1_RS19215 WP_219250631.1 4398383..4399093(-) (ssb) [Shewanella oncorhynchi strain XWfb1]
ATGGCCAGTCGTGGTGTTAACAAGGTAATTTTGGTTGGCAATTTGGGACAAGATCCAGAAGTGCGTTATATGCCAAACGG
TAATGCAGTCGCAAACATCACAGTAGCGACTAGCGAATCGTGGAAAGACCAACAGGGTCAACAGCAAGAGCGTACTGAAT
GGCACCGTGTGGTTCTGTTCGGCAAATTAGCTGAAATTACAGGTGAATACCTGCGTAAAGGTTCACAGGTTTACCTTGAA
GGTAAACTGCAAACTCGTAAGTGGAAAGATCAAAGTGGTCAAGACCGTTACAGCACTGAAGTGGTTATCGACCAAAGCGG
TAGCATGCAAATGCTAGGTAGCCGTGGTCAAGGTGGACAAGCACAAGGCGCGCCAATGGGCGGCGGCATGCCACAAAACG
CAGGTTATCAATCTGCACCACAACAAGCCGCTCCTGCGCAAAATCAATATGCGCCAGCGCCTCAAGCAGCACCTGCTTAC
CAAGCGCCAGCTCAGCAACAATATGCTCCGCCAGCACCTACCCAGCAGCAAGGTTATGGTCAGCCACAGGCTCAACAACC
ACAACAAGGTGGTTATGCGCCTAAACCACAAGCCGCTCCAGCGCCAGCTTATCAAGCGCCTGCAGCACCGGCACAGCGTC
CAGCGCCACAACCACAGCAAAACTTCACTCCAGATTTGGATGATGGCTGGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

65.143

74.153

0.483
  ssb Glaesserella parasuis strain SC1401

45.726

99.153

0.453
  ssb Neisseria meningitidis MC58

39.485

98.729

0.39

Multiple sequence alignment