Detailed information NTG1095957

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACMXD4_RS03960
• Genome accession: NZ_CP180476
• Coordinates: 885182..886522 (+)
• Length: 446 a.a.
• NCBI ID: WP_415879933.1
• Uniprot ID: -
• Organism: Methylomonas sp. TEB
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 880182..891522

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMXD4_RS03945 (ACMXD4_03945)	sucD	881421..882296 (-)	876	WP_415879930.1	succinate--CoA ligase subunit alpha	-
ACMXD4_RS03950 (ACMXD4_03950)	sucC	882296..883465 (-)	1170	WP_415879931.1	ADP-forming succinate--CoA ligase subunit beta	-
ACMXD4_RS03955 (ACMXD4_03955)	-	883641..885185 (+)	1545	WP_415879932.1	sensor histidine kinase	-
ACMXD4_RS03960 (ACMXD4_03960)	pilR	885182..886522 (+)	1341	WP_415879933.1	sigma-54-dependent transcriptional regulator	Regulator
ACMXD4_RS03965 (ACMXD4_03965)	-	886583..887071 (-)	489	WP_415879934.1	hypothetical protein	-
ACMXD4_RS03970 (ACMXD4_03970)	-	887223..889058 (-)	1836	WP_415879935.1	EAL domain-containing protein	-
ACMXD4_RS03975 (ACMXD4_03975)	-	889239..890090 (+)	852	WP_033156101.1	HDOD domain-containing protein	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49236.96 Da
• Isoelectric Point: 5.6858

>NTDB_id=1095957 ACMXD4_RS03960 WP_415879933.1 885182..886522(+) (pilR) [Methylomonas sp. TEB]
MNMPVTLVVDDEPDIRELLEITLNRMHIQTRCAANLAEAKQLLAVEVFDLCLTDMKLPDGDGLDLVEHIQLAGLQLPVAV
ITAHGSMDIAIKAMKKGAFDFLSKPVDLGILRQLVSHALQASLTRVSDKERRTRDILLGESALMCAIRSKIDKVARNQAP
VYISGESGSGKELVARLIHQQSPRGEKPFIAINCGAIPPELMESEFFGHKKGSFTGAVADKQGLFQAADGGTLFLDEVAD
LPLPLQVKLLRAIQEKKVRPVGEQREVPVDVRLLSATHKDLSKMVQEGSFRQDLYYRINVIELSLPPLRARSADIPQLTE
HLLAGLANANGMDLPKLSDSALNALKHYYFPGNVRELENILERALALHDGGVIEADDLNLPLGMELAAVEDFDAEKMSLE
AYLEDIEKKALSAALEENRWNKTATAKYLGLSFRSLRYRLKKLGLE

Nucleotide

• Length: 1341 bp

>NTDB_id=1095957 ACMXD4_RS03960 WP_415879933.1 885182..886522(+) (pilR) [Methylomonas sp. TEB]
ATGAATATGCCTGTCACCCTGGTTGTCGACGACGAACCCGACATCCGAGAATTACTCGAAATAACCCTGAACCGCATGCA
CATTCAAACCCGTTGCGCGGCCAATTTGGCCGAGGCCAAACAGCTACTGGCCGTTGAGGTGTTTGATTTGTGTCTTACCG
ATATGAAGCTGCCGGACGGCGATGGGCTGGATTTGGTCGAGCACATTCAATTAGCCGGTTTGCAGTTGCCGGTGGCGGTG
ATTACTGCGCATGGCAGCATGGATATTGCGATCAAAGCCATGAAAAAGGGAGCTTTTGACTTCCTGTCCAAGCCGGTCGA
TTTGGGGATATTGCGGCAGCTGGTCAGTCATGCGCTGCAAGCCTCGCTAACTAGGGTTTCCGACAAGGAGCGACGTACCC
GCGACATCTTGTTGGGTGAGTCTGCATTAATGTGCGCTATTCGCTCGAAGATCGACAAGGTGGCGCGCAACCAGGCGCCG
GTTTATATCAGCGGAGAGTCCGGTTCGGGCAAGGAGTTGGTGGCCAGATTGATACACCAGCAAAGCCCGCGCGGCGAGAA
ACCGTTTATTGCGATTAACTGCGGAGCGATTCCGCCTGAATTGATGGAAAGCGAATTCTTCGGGCATAAAAAAGGCAGTT
TCACCGGCGCGGTAGCCGACAAGCAAGGCTTGTTTCAGGCGGCCGATGGCGGCACCTTGTTTTTGGATGAAGTGGCCGAT
TTGCCTTTGCCCTTGCAAGTTAAATTGTTGCGGGCGATTCAGGAGAAAAAAGTCCGCCCGGTCGGCGAACAGCGGGAAGT
GCCTGTCGATGTGCGCTTATTGAGTGCAACCCACAAGGATTTGAGCAAGATGGTCCAAGAAGGCAGTTTTAGGCAGGATT
TGTACTACCGGATCAATGTCATCGAGCTGAGTTTGCCACCCCTGCGCGCCCGGTCCGCCGATATTCCTCAGCTTACCGAG
CACTTATTGGCGGGCTTGGCTAATGCCAACGGTATGGATTTGCCCAAACTCAGCGACTCTGCGCTAAATGCGTTAAAGCA
CTACTATTTTCCCGGCAATGTTCGGGAGCTGGAAAATATATTGGAGCGGGCGCTGGCCTTGCACGATGGCGGCGTGATTG
AAGCCGATGATCTGAACTTGCCGTTGGGGATGGAATTGGCTGCGGTCGAAGATTTCGACGCCGAGAAAATGTCGCTGGAA
GCCTATCTCGAAGACATAGAGAAAAAAGCCTTGAGTGCGGCGCTGGAGGAAAATCGTTGGAACAAAACCGCTACCGCTAA
ATACTTGGGCCTAAGCTTCCGTTCGCTGCGGTATCGCTTGAAAAAGTTGGGTCTTGAATAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-115)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Sigma-54 interaction domain (Sigma54_activat) (138-303)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.415	100	0.641
pilR	Acinetobacter baumannii strain A118	49.676	100	0.516
luxO	Vibrio cholerae strain A1552	39.367	99.103	0.39