Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYG   Type   Machinery gene
Locus tag   ACGHT2_RS00770 Genome accession   NZ_AP031455
Coordinates   113006..113356 (+) Length   116 a.a.
NCBI ID   WP_238374707.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain k46-0107-A9     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 108006..118356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHT2_RS00735 (K460107A9_00930) - 109335..109697 (+) 363 WP_058692629.1 DUF1033 family protein -
  ACGHT2_RS00740 (K460107A9_00940) comYA 109768..110709 (+) 942 WP_003062917.1 competence type IV pilus ATPase ComGA Machinery gene
  ACGHT2_RS00745 (K460107A9_00950) comYB 110633..111676 (+) 1044 WP_003062919.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACGHT2_RS00750 (K460107A9_00960) comYC 111676..111969 (+) 294 WP_003062921.1 competence type IV pilus major pilin ComGC Machinery gene
  ACGHT2_RS00755 (K460107A9_00970) comYD 111953..112384 (+) 432 WP_058692630.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACGHT2_RS00760 (K460107A9_00980) comGE 112338..112631 (+) 294 WP_081048608.1 competence type IV pilus minor pilin ComGE -
  ACGHT2_RS00765 (K460107A9_00990) comYF 112585..113052 (+) 468 WP_058692632.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACGHT2_RS00770 (K460107A9_01000) comYG 113006..113356 (+) 351 WP_238374707.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACGHT2_RS00775 (K460107A9_01010) comYH 113411..114382 (+) 972 WP_117479470.1 class I SAM-dependent methyltransferase Machinery gene
  ACGHT2_RS00780 (K460107A9_01020) - 114420..115619 (+) 1200 WP_058692635.1 acetate kinase -
  ACGHT2_RS00785 (K460107A9_01030) - 115786..115986 (+) 201 WP_058692636.1 helix-turn-helix transcriptional regulator -
  ACGHT2_RS00790 (K460107A9_01040) - 115996..116202 (+) 207 WP_058692637.1 hypothetical protein -
  ACGHT2_RS00795 (K460107A9_01050) - 116217..116645 (+) 429 WP_238374708.1 ABC transporter permease -
  ACGHT2_RS00800 (K460107A9_01060) - 116657..117292 (+) 636 WP_058692639.1 CPBP family intramembrane glutamic endopeptidase -
  ACGHT2_RS00805 (K460107A9_01070) proC 117336..118106 (-) 771 WP_058692640.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 116 a.a.        Molecular weight: 13367.52 Da        Isoelectric Point: 7.3149

>NTDB_id=109590 ACGHT2_RS00770 WP_238374707.1 113006..113356(+) (comYG) [Streptococcus pasteurianus strain k46-0107-A9]
MVWRGHLFTLLKQQVKAGILIYALLMAAIFALLLQFYLGRVVAMERQHQAQLSASQAYLMAELTKDLAKEDTGHLTFDQG
VTDYNFQDNRLQVMVKLPNQQEFDFVFQSVQKEKAN

Nucleotide


Download         Length: 351 bp        

>NTDB_id=109590 ACGHT2_RS00770 WP_238374707.1 113006..113356(+) (comYG) [Streptococcus pasteurianus strain k46-0107-A9]
ATGGTTTGGAGAGGACATTTGTTTACACTTTTGAAACAGCAAGTTAAGGCAGGGATTTTAATCTATGCTTTGCTTATGGC
AGCAATTTTTGCCTTGCTTTTGCAATTTTATCTAGGACGTGTCGTGGCAATGGAGCGACAACACCAAGCGCAGCTATCTG
CTAGTCAGGCTTATTTAATGGCAGAATTAACAAAAGATTTGGCAAAAGAGGATACTGGTCATCTTACATTTGACCAAGGA
GTAACTGACTACAACTTCCAAGATAATCGATTGCAGGTGATGGTCAAACTGCCTAATCAACAAGAATTTGACTTTGTTTT
CCAAAGTGTTCAGAAAGAGAAAGCTAATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYG Streptococcus mutans UA140

53.333

90.517

0.483
  comYG Streptococcus mutans UA159

53.333

90.517

0.483
  comGG/cglG Streptococcus mitis NCTC 12261

42.424

85.345

0.362

Multiple sequence alignment