Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ACMX8W_RS13495 Genome accession   NZ_CP180439
Coordinates   2576442..2576873 (-) Length   143 a.a.
NCBI ID   WP_015384089.1    Uniprot ID   -
Organism   Bacillus subtilis strain Z-294     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2571442..2581873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMX8W_RS13445 (ACMX8W_13445) sinI 2571637..2571810 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  ACMX8W_RS13450 (ACMX8W_13450) sinR 2571844..2572179 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  ACMX8W_RS13455 (ACMX8W_13455) tasA 2572272..2573057 (-) 786 WP_003230183.1 biofilm matrix protein TasA -
  ACMX8W_RS13460 (ACMX8W_13460) sipW 2573121..2573693 (-) 573 WP_080030740.1 signal peptidase I SipW -
  ACMX8W_RS13465 (ACMX8W_13465) tapA 2573677..2574438 (-) 762 WP_047182870.1 amyloid fiber anchoring/assembly protein TapA -
  ACMX8W_RS13470 (ACMX8W_13470) yqzG 2574708..2575034 (+) 327 WP_047183570.1 YqzG/YhdC family protein -
  ACMX8W_RS13475 (ACMX8W_13475) spoIITA 2575076..2575255 (-) 180 WP_003230176.1 YqzE family protein -
  ACMX8W_RS13480 (ACMX8W_13480) comGG 2575327..2575701 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  ACMX8W_RS13485 (ACMX8W_13485) comGF 2575702..2576085 (-) 384 WP_015384087.1 ComG operon protein ComGF Machinery gene
  ACMX8W_RS13490 (ACMX8W_13490) comGE 2576111..2576458 (-) 348 WP_047182872.1 ComG operon protein 5 Machinery gene
  ACMX8W_RS13495 (ACMX8W_13495) comGD 2576442..2576873 (-) 432 WP_015384089.1 comG operon protein ComGD Machinery gene
  ACMX8W_RS13500 (ACMX8W_13500) comGC 2576863..2577159 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene
  ACMX8W_RS13505 (ACMX8W_13505) comGB 2577173..2578210 (-) 1038 WP_047182873.1 comG operon protein ComGB Machinery gene
  ACMX8W_RS13510 (ACMX8W_13510) comGA 2578197..2579267 (-) 1071 WP_015483431.1 competence protein ComGA Machinery gene
  ACMX8W_RS13515 (ACMX8W_13515) corA 2579677..2580630 (-) 954 WP_015483432.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16064.60 Da        Isoelectric Point: 9.6754

>NTDB_id=1095883 ACMX8W_RS13495 WP_015384089.1 2576442..2576873(-) (comGD) [Bacillus subtilis strain Z-294]
MNIKLNEEEGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAARQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVNGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=1095883 ACMX8W_RS13495 WP_015384089.1 2576442..2576873(-) (comGD) [Bacillus subtilis strain Z-294]
TTGAACATTAAATTAAACGAGGAGGAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTTGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGGCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTCATTGAACGTCCGTATGCAACGGGACTATCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAATGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

97.902

100

0.979

Multiple sequence alignment