Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACMX2G_RS01375 Genome accession   NZ_CP180375
Coordinates   298054..298389 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain NJN-6     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 293054..303389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMX2G_RS01355 (ACMX2G_01355) gcvT 293665..294765 (-) 1101 WP_024085597.1 glycine cleavage system aminomethyltransferase GcvT -
  ACMX2G_RS01360 (ACMX2G_01360) - 295188..296858 (+) 1671 WP_003153107.1 DEAD/DEAH box helicase -
  ACMX2G_RS01365 (ACMX2G_01365) - 296876..297670 (+) 795 WP_003153106.1 YqhG family protein -
  ACMX2G_RS01370 (ACMX2G_01370) sinI 297847..298020 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  ACMX2G_RS01375 (ACMX2G_01375) sinR 298054..298389 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  ACMX2G_RS01380 (ACMX2G_01380) tasA 298437..299222 (-) 786 WP_015388008.1 biofilm matrix protein TasA -
  ACMX2G_RS01385 (ACMX2G_01385) sipW 299286..299870 (-) 585 WP_003153100.1 signal peptidase I SipW -
  ACMX2G_RS01390 (ACMX2G_01390) tapA 299842..300513 (-) 672 WP_024085598.1 amyloid fiber anchoring/assembly protein TapA -
  ACMX2G_RS01395 (ACMX2G_01395) - 300773..301102 (+) 330 WP_024085599.1 DUF3889 domain-containing protein -
  ACMX2G_RS01400 (ACMX2G_01400) - 301142..301321 (-) 180 WP_003153093.1 YqzE family protein -
  ACMX2G_RS01405 (ACMX2G_01405) comGG 301378..301755 (-) 378 WP_003153092.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACMX2G_RS01410 (ACMX2G_01410) comGF 301756..302151 (-) 396 WP_003153090.1 competence type IV pilus minor pilin ComGF -
  ACMX2G_RS01415 (ACMX2G_01415) comGE 302165..302479 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACMX2G_RS01420 (ACMX2G_01420) comGD 302463..302900 (-) 438 WP_024085600.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACMX2G_RS01425 (ACMX2G_01425) comGC 302890..303156 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1095446 ACMX2G_RS01375 WP_003153104.1 298054..298389(+) (sinR) [Bacillus velezensis strain NJN-6]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1095446 ACMX2G_RS01375 WP_003153104.1 298054..298389(+) (sinR) [Bacillus velezensis strain NJN-6]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment