Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACMVYO_RS00470 Genome accession   NZ_CP180296
Coordinates   96938..97810 (+) Length   290 a.a.
NCBI ID   WP_019835580.1    Uniprot ID   A0A8I1BF79
Organism   Staphylococcus hominis strain YSMAS1_1_D4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 91938..102810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMVYO_RS00450 (ACMVYO_00450) ylqF 92825..93709 (+) 885 WP_017174591.1 ribosome biogenesis GTPase YlqF -
  ACMVYO_RS00455 (ACMVYO_00455) - 93693..94460 (+) 768 WP_017174592.1 ribonuclease HII -
  ACMVYO_RS00460 (ACMVYO_00460) sucC 94587..95753 (+) 1167 WP_017174593.1 ADP-forming succinate--CoA ligase subunit beta -
  ACMVYO_RS00465 (ACMVYO_00465) sucD 95775..96680 (+) 906 WP_037540990.1 succinate--CoA ligase subunit alpha -
  ACMVYO_RS00470 (ACMVYO_00470) dprA 96938..97810 (+) 873 WP_019835580.1 DNA-processing protein DprA Machinery gene
  ACMVYO_RS00475 (ACMVYO_00475) topA 97949..100018 (+) 2070 WP_017174596.1 type I DNA topoisomerase -
  ACMVYO_RS00480 (ACMVYO_00480) trmFO 100042..101349 (+) 1308 WP_002455420.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACMVYO_RS00485 (ACMVYO_00485) xerC 101487..102380 (+) 894 WP_415401011.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33605.64 Da        Isoelectric Point: 8.7142

>NTDB_id=1095103 ACMVYO_RS00470 WP_019835580.1 96938..97810(+) (dprA) [Staphylococcus hominis strain YSMAS1_1_D4]
MNDFILLKMRWIGYTTQHIHHLLNVFPKFFNVNEHDQFEMINEWESLYLKKKRFTQLTEISYDYIQTQLSRYQVNYVTSF
SSQYPSLLKTIYDYPFILFYRGNIHLLSSTYTLGVVGSREATNYSKCALDYLFPHFINIPLTIVSGLAKGADSIAHQFAL
KHHLPTIAVLGFGHLNHYPKETRKLRNIIEETGLVISEYPPLTKINKYQFPERNRLISGLSRGVLITEAKIKSGSQITID
CALDQNRNVYVLPGSMFNPLTKGNLLRAQEGAMIVSEAEDILYDYRFLND

Nucleotide


Download         Length: 873 bp        

>NTDB_id=1095103 ACMVYO_RS00470 WP_019835580.1 96938..97810(+) (dprA) [Staphylococcus hominis strain YSMAS1_1_D4]
ATGAATGATTTTATTTTATTAAAAATGAGATGGATAGGGTATACGACCCAACATATTCATCATTTACTCAATGTATTTCC
AAAATTTTTCAATGTTAATGAACATGATCAATTTGAAATGATCAATGAATGGGAATCTCTATATTTAAAAAAGAAGCGTT
TTACTCAATTAACAGAGATTTCTTACGATTATATTCAAACCCAACTTTCTAGATATCAGGTTAACTATGTTACTTCATTT
TCTTCTCAATATCCTTCATTGCTTAAAACTATTTACGACTATCCTTTTATATTATTTTATCGTGGAAATATACATTTATT
ATCATCTACGTATACTTTAGGTGTTGTAGGTTCACGTGAGGCCACAAATTATTCTAAGTGTGCACTAGATTATCTATTTC
CTCACTTTATAAATATTCCACTAACGATTGTATCCGGTTTAGCGAAAGGTGCTGATAGCATAGCTCATCAATTCGCATTA
AAACATCATCTTCCAACTATTGCAGTTCTAGGTTTTGGTCATTTAAATCATTATCCAAAGGAAACACGAAAGTTACGCAA
TATAATTGAAGAAACTGGTTTAGTCATAAGTGAATATCCTCCTTTAACAAAAATAAACAAATATCAATTCCCTGAAAGAA
ATCGTCTGATAAGCGGGTTGTCTCGTGGTGTATTAATTACTGAAGCTAAAATTAAAAGTGGTAGTCAAATTACAATAGAT
TGTGCTTTAGATCAAAATAGAAATGTTTATGTACTGCCTGGATCGATGTTTAATCCTTTGACAAAAGGAAATTTATTACG
TGCTCAAGAAGGTGCAATGATTGTTTCAGAAGCAGAAGATATATTATATGATTATCGCTTTTTAAACGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

53.979

99.655

0.538
  dprA Staphylococcus aureus N315

53.819

99.31

0.534
  dprA Streptococcus mutans UA159

36.897

100

0.369

Multiple sequence alignment