Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACMVYP_RS08050 Genome accession   NZ_CP180295
Coordinates   1594948..1595820 (+) Length   290 a.a.
NCBI ID   WP_019835580.1    Uniprot ID   A0A8I1BF79
Organism   Staphylococcus hominis strain YSMAS1_1_A7     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1589948..1600820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMVYP_RS08030 (ACMVYP_08030) ylqF 1590835..1591719 (+) 885 WP_017174591.1 ribosome biogenesis GTPase YlqF -
  ACMVYP_RS08035 (ACMVYP_08035) - 1591703..1592470 (+) 768 WP_017174592.1 ribonuclease HII -
  ACMVYP_RS08040 (ACMVYP_08040) sucC 1592597..1593763 (+) 1167 WP_017174593.1 ADP-forming succinate--CoA ligase subunit beta -
  ACMVYP_RS08045 (ACMVYP_08045) sucD 1593785..1594690 (+) 906 WP_017174594.1 succinate--CoA ligase subunit alpha -
  ACMVYP_RS08050 (ACMVYP_08050) dprA 1594948..1595820 (+) 873 WP_019835580.1 DNA-processing protein DprA Machinery gene
  ACMVYP_RS08055 (ACMVYP_08055) topA 1595959..1598028 (+) 2070 WP_017174596.1 type I DNA topoisomerase -
  ACMVYP_RS08060 (ACMVYP_08060) trmFO 1598052..1599359 (+) 1308 WP_017174597.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACMVYP_RS08065 (ACMVYP_08065) xerC 1599497..1600390 (+) 894 WP_017174598.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33605.64 Da        Isoelectric Point: 8.7142

>NTDB_id=1095085 ACMVYP_RS08050 WP_019835580.1 1594948..1595820(+) (dprA) [Staphylococcus hominis strain YSMAS1_1_A7]
MNDFILLKMRWIGYTTQHIHHLLNVFPKFFNVNEHDQFEMINEWESLYLKKKRFTQLTEISYDYIQTQLSRYQVNYVTSF
SSQYPSLLKTIYDYPFILFYRGNIHLLSSTYTLGVVGSREATNYSKCALDYLFPHFINIPLTIVSGLAKGADSIAHQFAL
KHHLPTIAVLGFGHLNHYPKETRKLRNIIEETGLVISEYPPLTKINKYQFPERNRLISGLSRGVLITEAKIKSGSQITID
CALDQNRNVYVLPGSMFNPLTKGNLLRAQEGAMIVSEAEDILYDYRFLND

Nucleotide


Download         Length: 873 bp        

>NTDB_id=1095085 ACMVYP_RS08050 WP_019835580.1 1594948..1595820(+) (dprA) [Staphylococcus hominis strain YSMAS1_1_A7]
ATGAATGATTTTATTTTATTAAAAATGAGATGGATAGGGTATACGACCCAACATATTCATCATTTACTCAATGTATTTCC
AAAATTTTTCAATGTTAATGAACATGATCAATTTGAAATGATCAATGAATGGGAATCTCTATATTTAAAAAAGAAGCGTT
TTACTCAATTAACAGAGATTTCTTACGATTATATTCAAACCCAACTTTCTAGATATCAGGTTAACTATGTTACTTCATTT
TCTTCTCAATATCCTTCATTGCTTAAAACTATTTACGACTATCCTTTTATATTATTTTATCGTGGAAATATACATTTATT
ATCATCTACGTATACTTTAGGTGTTGTAGGTTCACGTGAGGCCACAAATTATTCTAAGTGTGCACTAGATTATCTATTTC
CTCACTTTATAAATATTCCACTAACGATTGTATCCGGTTTAGCGAAAGGTGCTGATAGCATAGCTCATCAATTCGCATTA
AAACATCATCTTCCAACTATTGCAGTTCTAGGTTTTGGTCATTTAAATCATTATCCAAAGGAAACACGAAAGTTACGCAA
TATAATTGAAGAAACTGGTTTAGTCATAAGTGAATATCCTCCTTTAACAAAAATAAACAAATATCAATTCCCTGAAAGAA
ATCGTCTGATAAGCGGGTTGTCTCGTGGTGTATTAATTACTGAAGCTAAAATTAAAAGTGGTAGTCAAATTACAATAGAT
TGTGCTTTAGATCAAAATAGAAATGTTTATGTACTGCCTGGATCGATGTTTAATCCTTTGACAAAAGGAAATTTATTACG
TGCTCAAGAAGGTGCAATGATTGTTTCAGAAGCAGAAGATATATTATATGATTATCGCTTTTTAAACGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

53.979

99.655

0.538
  dprA Staphylococcus aureus N315

53.819

99.31

0.534
  dprA Streptococcus mutans UA159

36.897

100

0.369

Multiple sequence alignment