Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACMUEV_RS13175 Genome accession   NZ_CP180258
Coordinates   2840142..2840522 (+) Length   126 a.a.
NCBI ID   WP_017288634.1    Uniprot ID   -
Organism   Leptolyngbya sp. FACHB-1624     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2835142..2845522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMUEV_RS13170 (ACMUEV_13165) - 2835306..2839511 (-) 4206 WP_190651925.1 CheR family methyltransferase -
  ACMUEV_RS13175 (ACMUEV_13170) pilH 2840142..2840522 (+) 381 WP_017288634.1 response regulator Machinery gene
  ACMUEV_RS13180 (ACMUEV_13175) - 2840549..2841100 (-) 552 WP_415354687.1 IS630 family transposase -
  ACMUEV_RS13185 (ACMUEV_13180) - 2841121..2841624 (-) 504 WP_415354688.1 helix-turn-helix domain-containing protein -
  ACMUEV_RS13190 (ACMUEV_13185) - 2841833..2842138 (+) 306 WP_026148689.1 hypothetical protein -
  ACMUEV_RS13195 (ACMUEV_13190) - 2842318..2843238 (+) 921 WP_190653662.1 tetratricopeptide repeat protein -
  ACMUEV_RS13200 (ACMUEV_13195) - 2843627..2844088 (+) 462 WP_190653661.1 tRNA (cytidine(34)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14101.24 Da        Isoelectric Point: 4.6436

>NTDB_id=1094890 ACMUEV_RS13175 WP_017288634.1 2840142..2840522(+) (pilH) [Leptolyngbya sp. FACHB-1624]
MSWVLVVDDSAVVRELISTELRHQGFDVAVANDGVDAISVIQKHPPDLVITDVVMPRMNGYELCRWIKSDPRSQNIPVMI
CSIKGEDFDRYWGMKQGADAYMIKPCPPAEMLSAIDYLLSRSATSN

Nucleotide


Download         Length: 381 bp        

>NTDB_id=1094890 ACMUEV_RS13175 WP_017288634.1 2840142..2840522(+) (pilH) [Leptolyngbya sp. FACHB-1624]
ATGAGTTGGGTTTTAGTCGTGGACGATAGCGCGGTTGTGCGAGAACTCATTTCTACCGAATTGCGGCATCAAGGATTTGA
TGTTGCCGTTGCGAATGATGGTGTTGATGCCATATCCGTCATTCAAAAACATCCACCCGACTTAGTCATTACCGATGTGG
TCATGCCACGGATGAATGGCTATGAACTTTGCCGTTGGATCAAAAGCGATCCGCGCAGCCAGAATATTCCCGTCATGATC
TGTTCGATCAAAGGTGAAGACTTCGATCGCTATTGGGGAATGAAACAAGGCGCAGATGCCTACATGATCAAACCCTGTCC
ACCTGCTGAGATGTTAAGTGCGATCGACTATTTACTGTCTCGCTCAGCCACGTCAAACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

56.303

94.444

0.532
  pilG Acinetobacter baumannii strain A118

41.964

88.889

0.373
  pilL-C Synechocystis sp. PCC 6803

38.983

93.651

0.365

Multiple sequence alignment