Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   ACLBKY_RS16505 Genome accession   NZ_CP180233
Coordinates   3190306..3191481 (-) Length   391 a.a.
NCBI ID   WP_003213166.1    Uniprot ID   -
Organism   Bacillus altitudinis strain Ba 5     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3185306..3196481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLBKY_RS16470 (ACLBKY_16470) - 3185482..3185901 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  ACLBKY_RS16475 (ACLBKY_16475) comFC 3185958..3186425 (-) 468 WP_035390201.1 ComF family protein Machinery gene
  ACLBKY_RS16480 (ACLBKY_16480) - 3186477..3186680 (-) 204 Protein_3189 hypothetical protein -
  ACLBKY_RS16485 (ACLBKY_16485) - 3186641..3186934 (-) 294 WP_008348267.1 late competence development ComFB family protein -
  ACLBKY_RS16490 (ACLBKY_16490) comFA 3186999..3188378 (-) 1380 WP_138826871.1 DEAD/DEAH box helicase Machinery gene
  ACLBKY_RS16495 (ACLBKY_16495) - 3188498..3189340 (-) 843 WP_007499966.1 DegV family protein -
  ACLBKY_RS16500 (ACLBKY_16500) degU 3189552..3190241 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  ACLBKY_RS16505 (ACLBKY_16505) degS 3190306..3191481 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  ACLBKY_RS16510 (ACLBKY_16510) - 3191703..3192371 (+) 669 WP_017357860.1 YigZ family protein -
  ACLBKY_RS16515 (ACLBKY_16515) - 3192356..3193447 (+) 1092 WP_025208065.1 LCP family protein -
  ACLBKY_RS16520 (ACLBKY_16520) - 3193484..3194551 (-) 1068 WP_007499956.1 glycosyltransferase family 4 protein -
  ACLBKY_RS16525 (ACLBKY_16525) tuaH 3194686..3195933 (-) 1248 WP_394157148.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 45523.25 Da        Isoelectric Point: 5.8757

>NTDB_id=1094765 ACLBKY_RS16505 WP_003213166.1 3190306..3191481(-) (degS) [Bacillus altitudinis strain Ba 5]
MTTPKMDPKLLDSIIMKMLSTVDGSKDEVFRIGEQSRQQYESLVEELKQIKQQVNEVIDFGDKLEVHTRHARNRLSEVSR
NFNKFSEEEIREAYEKAHNLQVELTMIQQREKQLRERRDDLERRLLSLQDVIERSETLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEEGFKEIRSLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEEYDGKTKITFQCLGDTESERIASQFEVALFRLAQEAVTNSLKHSEAEEISVKVEV
TKDFVTLIIKDDGKGFDMKDVKTNKNKSFGLLGMKERVDLLEGKMTIDSKIGLGTFIMIRVPLTLQNKIVK

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=1094765 ACLBKY_RS16505 WP_003213166.1 3190306..3191481(-) (degS) [Bacillus altitudinis strain Ba 5]
ATGACAACACCTAAAATGGATCCGAAGTTATTGGATTCAATCATCATGAAAATGCTAAGTACAGTTGATGGCAGTAAGGA
CGAAGTATTTAGAATCGGCGAACAGTCCCGTCAACAATATGAAAGCCTAGTAGAAGAGCTTAAGCAAATTAAACAGCAAG
TCAACGAAGTCATTGATTTTGGGGATAAACTAGAAGTACATACGAGACATGCTAGAAATCGTTTATCTGAAGTCAGCAGA
AACTTCAACAAATTCAGCGAAGAAGAAATACGAGAAGCCTATGAAAAAGCACATAACCTGCAAGTAGAATTGACCATGAT
CCAGCAGCGCGAAAAACAGCTGAGGGAAAGAAGAGATGATCTCGAAAGACGATTGTTAAGCTTACAAGACGTCATTGAAC
GTTCAGAAACGCTTGTGAGCCAGATCACGGTCGTCCTCAACTACTTGAACCAAGATTTACGTCAGGTCGGTGTTTTACTT
GAAGATGCTCAGGCAAAACAAGATTTTGGACTAAGAATTATTGAAGCCCAGGAAGAAGAGCGCAAAAGGGTATCACGAGA
AATCCATGATGGACCTGCTCAGATGCTGGCAAACGTGATGATGCGTTCAGAACTAATTGAACGAATTTTTAGAGACCGTG
GAACAGAAGAAGGATTTAAAGAAATTAGAAGTCTAAGACAGAATGTGCGAAATGCACTGTACGAAGTGAGAAGAATCATT
TATGATTTAAGACCGATGGCTTTAGATGATTTGGGTCTCATTCCGACACTGCGAAAATACTTAAACACAATTGAAGAATA
TGATGGAAAAACCAAAATTACGTTCCAGTGCTTAGGTGATACTGAAAGCGAAAGAATTGCTTCTCAATTTGAAGTGGCAC
TATTTAGACTAGCTCAAGAAGCTGTCACAAATTCTTTAAAGCATTCTGAAGCTGAAGAAATCTCTGTGAAGGTTGAAGTG
ACGAAAGACTTTGTCACCTTAATTATCAAAGACGATGGAAAAGGCTTTGATATGAAGGATGTTAAAACAAATAAAAACAA
ATCCTTTGGGTTACTTGGTATGAAAGAGCGCGTAGACTTACTAGAAGGTAAAATGACCATAGACTCAAAAATAGGTCTAG
GGACATTCATCATGATTAGAGTACCGTTAACATTACAAAATAAAATTGTAAAATAG

Domains

Predicted by InterproScan.

Sensor protein DegS (DegS)

(12-170)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

85.455

98.465

0.841

Multiple sequence alignment