Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACLBKY_RS16490 Genome accession   NZ_CP180233
Coordinates   3186999..3188378 (-) Length   459 a.a.
NCBI ID   WP_138826871.1    Uniprot ID   -
Organism   Bacillus altitudinis strain Ba 5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3181999..3193378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLBKY_RS16450 (ACLBKY_16450) flgL 3182182..3183093 (-) 912 WP_008348257.1 flagellar hook-associated protein FlgL -
  ACLBKY_RS16455 (ACLBKY_16455) flgK 3183102..3184622 (-) 1521 WP_138826534.1 flagellar hook-associated protein FlgK -
  ACLBKY_RS16460 (ACLBKY_16460) - 3184638..3185120 (-) 483 WP_007499977.1 flagellar protein FlgN -
  ACLBKY_RS16465 (ACLBKY_16465) flgM 3185139..3185402 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACLBKY_RS16470 (ACLBKY_16470) - 3185482..3185901 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  ACLBKY_RS16475 (ACLBKY_16475) comFC 3185958..3186425 (-) 468 WP_035390201.1 ComF family protein Machinery gene
  ACLBKY_RS16480 (ACLBKY_16480) - 3186477..3186680 (-) 204 Protein_3189 hypothetical protein -
  ACLBKY_RS16485 (ACLBKY_16485) - 3186641..3186934 (-) 294 WP_008348267.1 late competence development ComFB family protein -
  ACLBKY_RS16490 (ACLBKY_16490) comFA 3186999..3188378 (-) 1380 WP_138826871.1 DEAD/DEAH box helicase Machinery gene
  ACLBKY_RS16495 (ACLBKY_16495) - 3188498..3189340 (-) 843 WP_007499966.1 DegV family protein -
  ACLBKY_RS16500 (ACLBKY_16500) degU 3189552..3190241 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  ACLBKY_RS16505 (ACLBKY_16505) degS 3190306..3191481 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  ACLBKY_RS16510 (ACLBKY_16510) - 3191703..3192371 (+) 669 WP_017357860.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52527.14 Da        Isoelectric Point: 9.9201

>NTDB_id=1094763 ACLBKY_RS16490 WP_138826871.1 3186999..3188378(-) (comFA) [Bacillus altitudinis strain Ba 5]
MNLEKAMELSHKLQSRHLLPVECQCTQSELEWLENQGFIHRTPAVDRVASGLICCRCGVSNMRYFALSPCETCKKDCVYC
RSCIMLGKVSECGFLYEWTGPQKKDTRQVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYAL
NNGMSVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSIDE
RLQFAVLKSMKKTGVRIYLSATPSKKMQKDVARRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKRLKRNRLPASTMNWLHE
HITKKKRVLLFVPSISTMKKVTHILQVQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAE
SPIFTESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=1094763 ACLBKY_RS16490 WP_138826871.1 3186999..3188378(-) (comFA) [Bacillus altitudinis strain Ba 5]
TTGAATCTGGAAAAAGCAATGGAACTCAGTCACAAGCTACAATCAAGGCACCTTCTTCCTGTTGAATGTCAATGTACACA
GTCCGAATTGGAGTGGCTGGAGAATCAAGGATTTATCCATAGAACACCTGCAGTCGATAGGGTGGCGAGTGGTTTGATCT
GCTGCCGGTGCGGTGTATCAAACATGCGCTACTTTGCCCTCTCTCCGTGTGAAACATGTAAAAAAGACTGTGTATACTGT
AGATCCTGCATCATGCTGGGAAAAGTAAGCGAATGTGGCTTTCTCTACGAATGGACGGGTCCACAAAAGAAAGACACAAG
ACAAGTTGAATTAACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAA
ACAAATTTGATCTGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCATGGAATAAAATATGCGCTA
AATAACGGAATGAGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTTGAACCTCGAATGAGAAAGGCATT
TCAAGGACTGAATATAGCTGCACTTTATGGCGGGAGTTCTCAAAGATTTCAAATGGCGCCGCTTATGATCGCTACAACCC
ATCAGCTAATGAGATATAAAAACGCCTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTTATTCAATCGATGAA
CGGCTTCAGTTTGCTGTTTTAAAGTCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAAT
GCAAAAAGATGTTGCTCGTAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGTTACCTGTCCCAA
CATTTCAATGGGTTGGAGATTGGAAAAAGAGATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAA
CATATCACAAAGAAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGT
TCAAGATGTAAATGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGAT
ACGATGTATTGGTTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAAGTGGGCGTATTAGGTGCGGAA
TCTCCTATTTTTACAGAAAGTGCACTTGTTCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTTTTTAACGGAGACGT
GTACTTTTTTCATTTTGGCTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAA
AAGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(320-419)

Type III restriction enzyme, res subunit (ResIII)

(116-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.902

97.386

0.505

Multiple sequence alignment