Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACLBKY_RS16500 Genome accession   NZ_CP180233
Coordinates   3189552..3190241 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain Ba 5     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3184552..3195241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLBKY_RS16460 (ACLBKY_16460) - 3184638..3185120 (-) 483 WP_007499977.1 flagellar protein FlgN -
  ACLBKY_RS16465 (ACLBKY_16465) flgM 3185139..3185402 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACLBKY_RS16470 (ACLBKY_16470) - 3185482..3185901 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  ACLBKY_RS16475 (ACLBKY_16475) comFC 3185958..3186425 (-) 468 WP_035390201.1 ComF family protein Machinery gene
  ACLBKY_RS16480 (ACLBKY_16480) - 3186477..3186680 (-) 204 Protein_3189 hypothetical protein -
  ACLBKY_RS16485 (ACLBKY_16485) - 3186641..3186934 (-) 294 WP_008348267.1 late competence development ComFB family protein -
  ACLBKY_RS16490 (ACLBKY_16490) comFA 3186999..3188378 (-) 1380 WP_138826871.1 DEAD/DEAH box helicase Machinery gene
  ACLBKY_RS16495 (ACLBKY_16495) - 3188498..3189340 (-) 843 WP_007499966.1 DegV family protein -
  ACLBKY_RS16500 (ACLBKY_16500) degU 3189552..3190241 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  ACLBKY_RS16505 (ACLBKY_16505) degS 3190306..3191481 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  ACLBKY_RS16510 (ACLBKY_16510) - 3191703..3192371 (+) 669 WP_017357860.1 YigZ family protein -
  ACLBKY_RS16515 (ACLBKY_16515) - 3192356..3193447 (+) 1092 WP_025208065.1 LCP family protein -
  ACLBKY_RS16520 (ACLBKY_16520) - 3193484..3194551 (-) 1068 WP_007499956.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=1094764 ACLBKY_RS16500 WP_008348273.1 3189552..3190241(-) (degU) [Bacillus altitudinis strain Ba 5]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1094764 ACLBKY_RS16500 WP_008348273.1 3189552..3190241(-) (degU) [Bacillus altitudinis strain Ba 5]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAATGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment