Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   ACMVYT_RS12895 Genome accession   NZ_CP180209
Coordinates   2807878..2808585 (+) Length   235 a.a.
NCBI ID   WP_009888460.1    Uniprot ID   A0A9Q8EBL8
Organism   Clostridioides difficile strain 500/12     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2802878..2813585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMVYT_RS12865 (ACMVYT_12865) cdd1 2803517..2803763 (+) 247 Protein_2457 protein Cdd1 -
  ACMVYT_RS12870 (ACMVYT_12870) - 2803980..2804249 (-) 270 WP_009888452.1 DUF3795 domain-containing protein -
  ACMVYT_RS12875 (ACMVYT_12875) - 2804461..2804763 (-) 303 WP_009888454.1 hypothetical protein -
  ACMVYT_RS12880 (ACMVYT_12880) - 2805283..2806020 (-) 738 WP_003439186.1 ABC transporter permease -
  ACMVYT_RS12885 (ACMVYT_12885) - 2806032..2806793 (-) 762 WP_009888457.1 ABC transporter permease -
  ACMVYT_RS12890 (ACMVYT_12890) - 2806793..2807716 (-) 924 WP_012816028.1 ABC transporter ATP-binding protein -
  ACMVYT_RS12895 (ACMVYT_12895) scnR 2807878..2808585 (+) 708 WP_009888460.1 response regulator transcription factor Regulator
  ACMVYT_RS12900 (ACMVYT_12900) - 2808630..2810036 (+) 1407 WP_009892732.1 sensor histidine kinase -
  ACMVYT_RS12905 (ACMVYT_12905) - 2811625..2812014 (+) 390 WP_003426867.1 BlaI/MecI/CopY family transcriptional regulator -
  ACMVYT_RS12910 (ACMVYT_12910) - 2812759..2813229 (+) 471 WP_009888463.1 VOC family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26716.17 Da        Isoelectric Point: 6.1467

>NTDB_id=1094546 ACMVYT_RS12895 WP_009888460.1 2807878..2808585(+) (scnR) [Clostridioides difficile strain 500/12]
MESIKDKKILVVDDHKELLKMIDEILRKEGFSRVFLASSYEEAVRVFRNVKPDCAILDVVLPDGDGFSIMRKIRETSKIP
VIFLSARGEDEDRLIGLGLGADDYIVKPFLPKELTLRLVGILNRVYVPIEEEELPVFKLGDSVVVNLNSACVEKDGQEIS
LTAKEHSLLLKLYENKGRIVTNDSLCQAIWGDDMYGYENTLMVHVRRVREKIEKTPSTPKHLITVRGLGYKLMIN

Nucleotide


Download         Length: 708 bp        

>NTDB_id=1094546 ACMVYT_RS12895 WP_009888460.1 2807878..2808585(+) (scnR) [Clostridioides difficile strain 500/12]
ATGGAGTCAATAAAAGATAAAAAAATACTTGTGGTTGATGACCACAAGGAATTATTAAAAATGATAGATGAAATCCTAAG
AAAAGAGGGATTTAGTAGAGTATTTTTAGCATCAAGTTATGAAGAAGCTGTTAGGGTATTTAGAAATGTAAAGCCAGATT
GTGCAATTTTAGATGTTGTATTGCCAGATGGAGATGGTTTCTCTATTATGAGAAAAATTAGAGAGACATCTAAGATACCA
GTTATTTTTCTCTCTGCAAGAGGTGAAGATGAAGATAGATTGATTGGTTTGGGATTAGGGGCTGACGATTATATAGTAAA
GCCATTTTTACCAAAGGAACTTACTTTAAGGCTTGTGGGTATATTAAATCGTGTATATGTGCCTATAGAAGAAGAGGAGT
TGCCAGTATTTAAACTGGGAGATTCTGTTGTTGTGAATTTAAATAGTGCATGTGTTGAGAAAGATGGGCAAGAGATTTCT
TTAACAGCTAAAGAGCATTCGTTGCTTTTAAAGTTGTATGAAAATAAAGGGAGAATTGTTACTAATGATTCACTATGTCA
AGCCATTTGGGGAGATGATATGTATGGATATGAAAATACCCTTATGGTTCATGTTAGAAGGGTTAGAGAGAAGATAGAAA
AAACTCCATCTACACCTAAACATCTTATTACAGTAAGAGGTCTTGGATATAAGTTGATGATTAATTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-232)

Response regulator receiver domain (Response_reg)

(9-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

48.918

98.298

0.481
  micA Streptococcus pneumoniae Cp1015

40

100

0.4
  vicR Streptococcus mutans UA159

38.362

98.723

0.379

Multiple sequence alignment