Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ACMVO4_RS01255 Genome accession   NZ_CP180205
Coordinates   267327..267959 (-) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio europaeus strain EX1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 262327..272959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMVO4_RS01235 (ACMVO4_01235) - 262336..263550 (+) 1215 WP_414931800.1 aspartate aminotransferase family protein -
  ACMVO4_RS01240 (ACMVO4_01240) astA 263635..264654 (+) 1020 WP_069667826.1 arginine N-succinyltransferase -
  ACMVO4_RS01245 (ACMVO4_01245) astD 264690..266147 (+) 1458 WP_414931801.1 succinylglutamate-semialdehyde dehydrogenase -
  ACMVO4_RS01250 (ACMVO4_01250) - 266331..267122 (+) 792 WP_414931802.1 DUF1338 domain-containing protein -
  ACMVO4_RS01255 (ACMVO4_01255) crp 267327..267959 (-) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  ACMVO4_RS01260 (ACMVO4_01260) - 268202..269071 (-) 870 WP_069667829.1 phosphoribulokinase -
  ACMVO4_RS01265 (ACMVO4_01265) - 269160..269372 (-) 213 WP_069667830.1 YheU family protein -
  ACMVO4_RS01270 (ACMVO4_01270) - 269413..270390 (-) 978 WP_272238566.1 hydrolase -
  ACMVO4_RS01275 (ACMVO4_01275) - 270412..270891 (-) 480 WP_004745855.1 TIGR02444 family protein -
  ACMVO4_RS01280 (ACMVO4_01280) - 270888..272810 (-) 1923 WP_414931803.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=1094494 ACMVO4_RS01255 WP_004410522.1 267327..267959(-) (crp) [Vibrio europaeus strain EX1]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=1094494 ACMVO4_RS01255 WP_004410522.1 267327..267959(-) (crp) [Vibrio europaeus strain EX1]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACATTGTCATATTCATAAGTACCCTTCAAA
AAGCACGCTAATTCACGCGGGCGAGAAAGCTGAAACTTTGTACTACATCGTAAAAGGTTCAGTAGCGGTTCTTATTAAAG
ACGAAGAAGGTAAGGAGATGATCCTTTCTTACCTAAACCAAGGTGACTTTATCGGTGAACTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACAGCATGGGTTCGTGCTAAATCTCCTTGTGAAGTTGCGGAAATCTCATTTAAGAAATTCCGTCAGCTTAT
CCAAGTGAATCCAGATATCCTAATGCGCTTATCTGCGCAAATGGCAAGTCGCCTACAAGTGACTAGCCAAAAAGTAGGTG
ACCTAGCATTCCTAGACGTAACTGGCCGTATTGCTCAAACGCTACTAAACCTAGCGAAGCAACCAGATGCGATGACTCAC
CCAGATGGCATGCAGATTAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAAACTATCGTGGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment