Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACLN1Y_RS00055 Genome accession   NZ_CP180194
Coordinates   13544..14041 (+) Length   165 a.a.
NCBI ID   WP_414827183.1    Uniprot ID   -
Organism   Apilactobacillus kunkeei strain CA1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 8544..19041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLN1Y_RS00040 (ACLN1Y_00040) - 10069..11358 (+) 1290 WP_414827182.1 MFS transporter -
  ACLN1Y_RS00045 (ACLN1Y_00045) - 11936..13024 (+) 1089 WP_054607689.1 hypothetical protein -
  ACLN1Y_RS00050 (ACLN1Y_00050) rpsF 13209..13499 (+) 291 WP_053791249.1 30S ribosomal protein S6 -
  ACLN1Y_RS00055 (ACLN1Y_00055) ssb 13544..14041 (+) 498 WP_414827183.1 single-stranded DNA-binding protein Machinery gene
  ACLN1Y_RS00060 (ACLN1Y_00060) rpsR 14070..14306 (+) 237 WP_034530639.1 30S ribosomal protein S18 -
  ACLN1Y_RS00065 (ACLN1Y_00065) - 14471..16507 (+) 2037 WP_081006845.1 DHH family phosphoesterase -
  ACLN1Y_RS00070 (ACLN1Y_00070) rplI 16575..17027 (+) 453 WP_034530642.1 50S ribosomal protein L9 -
  ACLN1Y_RS00075 (ACLN1Y_00075) dnaB 17052..18440 (+) 1389 WP_034530644.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17960.30 Da        Isoelectric Point: 4.4398

>NTDB_id=1094403 ACLN1Y_RS00055 WP_414827183.1 13544..14041(+) (ssb) [Apilactobacillus kunkeei strain CA1]
MINRTTLTGRLTRDVDLRYTPSGSAVGNFTLAVDRSFTNQQGEREADFINCVIWRKSAENFANFTHKGALVGIDGRIQTR
NYENQQGQRVYVTEVVVENFALLEPRSSNQGNNNAGNNAPQANAGNNNPFDSSNNAPSSNGGNNSADPFANSGDQIDISD
DDLPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1094403 ACLN1Y_RS00055 WP_414827183.1 13544..14041(+) (ssb) [Apilactobacillus kunkeei strain CA1]
ATGATTAATCGTACAACTTTAACTGGTAGATTAACACGGGATGTTGATTTGCGATACACTCCAAGCGGTTCAGCCGTAGG
TAACTTCACTTTAGCTGTTGATCGTAGTTTTACCAACCAACAAGGTGAAAGAGAAGCAGATTTTATCAACTGTGTTATCT
GGCGTAAATCCGCTGAAAACTTTGCTAACTTCACCCATAAGGGTGCTTTGGTTGGTATTGATGGACGTATTCAAACAAGA
AATTACGAAAATCAACAAGGCCAAAGAGTATATGTTACTGAAGTAGTTGTAGAAAACTTTGCATTACTAGAACCTCGTTC
AAGTAACCAAGGTAACAACAACGCCGGCAACAATGCTCCTCAAGCAAATGCAGGAAATAACAATCCATTTGATTCATCAA
ACAACGCCCCATCAAGTAATGGTGGCAACAACTCAGCGGATCCGTTCGCTAACTCTGGTGATCAAATTGATATTTCCGAT
GATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

67.442

100

0.703
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.618
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

64.242

0.364

Multiple sequence alignment