Detailed information NTG1093864

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACMGRF_RS14055
• Genome accession: NZ_CP179923
• Coordinates: 3045785..3047158 (+)
• Length: 457 a.a.
• NCBI ID: WP_049416947.1
• Uniprot ID: -
• Organism: Stenotrophomonas sp. EMP41
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3040785..3052158

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMGRF_RS14040 (ACMGRF_14040)	sucD	3041635..3042510 (-)	876	WP_005418610.1	succinate--CoA ligase subunit alpha	-
ACMGRF_RS14045 (ACMGRF_14045)	sucC	3042535..3043704 (-)	1170	WP_049416943.1	ADP-forming succinate--CoA ligase subunit beta	-
ACMGRF_RS14050 (ACMGRF_14050)	-	3044111..3045724 (+)	1614	WP_049416945.1	sensor histidine kinase	-
ACMGRF_RS14055 (ACMGRF_14055)	pilR	3045785..3047158 (+)	1374	WP_049416947.1	sigma-54-dependent transcriptional regulator	Regulator
ACMGRF_RS14060 (ACMGRF_14060)	pilB	3047243..3048973 (-)	1731	WP_414485325.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACMGRF_RS14065 (ACMGRF_14065)	-	3049337..3050209 (+)	873	WP_414485326.1	glycosyltransferase family 2 protein	-
ACMGRF_RS14070 (ACMGRF_14070)	-	3050221..3051435 (+)	1215	WP_414485327.1	glycosyltransferase	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49681.93 Da
• Isoelectric Point: 6.4421

>NTDB_id=1093864 ACMGRF_RS14055 WP_049416947.1 3045785..3047158(+) (pilR) [Stenotrophomonas sp. EMP41]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIAVLRGLVKHALELNNTERPAPGPAAEQGARLLGDSPAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELRVPPLRERRQDLPE
LAASVLARLARSHGRPTPLLAPSALDALAQYAFPGNVRELENILERALALAEEDRIGADDLRLPQHAPRTPGSAAHAEAV
VDLQPGNAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=1093864 ACMGRF_RS14055 WP_049416947.1 3045785..3047158(+) (pilR) [Stenotrophomonas sp. EMP41]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTACTGACGCTCGGCCGCAT
GGGGCTGCGCATCAGTACCGCAGCCAACCTTGCCGAAGCGCGCGAACTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCGGACGGCAATGGCATCGAGCTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAGGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
GGACATCGCCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAACTGAACAACACCGAGCGCCCTGCACCCGGCCCCGCCG
CCGAACAGGGCGCACGCCTGCTCGGCGATTCGCCGGCCATGGACGTGCTGCGTACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGCGAATCCGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGCCCAGGGCGCCCG
CGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGTGCCATTCCCGGCGAGCTGATGGAGAGTGAATTCTTCGGCCACCGCA
AGGGCAGCTTCAGCGGCGCCCACGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGCGGCACCCTGTTCCTGGACGAA
GTGGCCGAGCTGCCCCTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCGCGGTCGGCGCCGC
CAACGAAGAGCCGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGAGCTGGTCGAGGACGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAACTGAGGGTGCCGCCGCTGCGCGAGCGTCGCCAGGACCTGCCGGAA
CTGGCCGCGTCGGTGCTGGCACGACTGGCCCGCAGCCATGGCCGCCCGACGCCGTTGCTGGCGCCGTCGGCACTGGACGC
ACTGGCCCAGTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTGGAACGCGCGCTGGCACTGGCCGAAGAAG
ACCGTATCGGCGCCGACGACCTGCGCCTGCCGCAGCATGCCCCACGCACGCCCGGCAGCGCAGCGCATGCCGAAGCGGTG
GTGGACCTGCAGCCCGGCAACGCCGCCCTGCCCTCGTACATCGAACAGCTCGAACGCAGCGCCATCCAGCGCGCGCTGGA
AGAAAACCGCTGGAACAAGACCCGCACCGCCGCGCAGCTGGGCATCACCTTCCGCGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Sigma-54 interaction domain (Sigma54_activat) (141-306)

• Response regulator receiver domain (Response_reg) (8-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.939	99.781	0.628
pilR	Acinetobacter baumannii strain A118	48.38	100	0.49