Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACMGGI_RS22035 Genome accession   NZ_CP179906
Coordinates   4903881..4906103 (-) Length   740 a.a.
NCBI ID   WP_414155035.1    Uniprot ID   -
Organism   Pseudomonas sp. BNK-43-b     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4898881..4911103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGGI_RS22000 (ACMGGI_22000) murB 4899242..4900261 (-) 1020 WP_112897749.1 UDP-N-acetylmuramate dehydrogenase -
  ACMGGI_RS22005 (ACMGGI_22005) - 4900258..4900722 (-) 465 WP_323453847.1 low molecular weight protein-tyrosine-phosphatase -
  ACMGGI_RS22010 (ACMGGI_22010) kdsB 4900722..4901486 (-) 765 WP_414155036.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACMGGI_RS22015 (ACMGGI_22015) - 4901483..4901668 (-) 186 WP_054893060.1 Trm112 family protein -
  ACMGGI_RS22020 (ACMGGI_22020) lpxK 4901710..4902705 (-) 996 WP_054893059.1 tetraacyldisaccharide 4'-kinase -
  ACMGGI_RS22025 (ACMGGI_22025) - 4902705..4903138 (-) 434 Protein_4321 ExbD/TolR family protein -
  ACMGGI_RS22030 (ACMGGI_22030) exbB 4903135..4903770 (-) 636 WP_054893125.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACMGGI_RS22035 (ACMGGI_22035) comA 4903881..4906103 (-) 2223 WP_414155035.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACMGGI_RS22040 (ACMGGI_22040) - 4906246..4906872 (+) 627 WP_151924181.1 DUF2062 domain-containing protein -
  ACMGGI_RS22045 (ACMGGI_22045) - 4906756..4907535 (-) 780 WP_054893055.1 ABC transporter permease -
  ACMGGI_RS22050 (ACMGGI_22050) - 4907532..4908464 (-) 933 WP_414155034.1 ABC transporter ATP-binding protein -
  ACMGGI_RS22055 (ACMGGI_22055) - 4908612..4909235 (-) 624 WP_112897747.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 80730.85 Da        Isoelectric Point: 11.0938

>NTDB_id=1093741 ACMGGI_RS22035 WP_414155035.1 4903881..4906103(-) (comA) [Pseudomonas sp. BNK-43-b]
MRTGMSALALGLLSLGLLPALPSVGWLFLLFLSALMCLFTRVWPIGWFLLGLSWACWSAQQALDDRLIAELDGRTLWLEG
RVTGLATQSGRSVRFELDEAQSRRAKLPRRMQLSWFDGPMVRTGERWRLAVNLRRPQGLLNPHGPDREAMLLARRIGATG
TVKAGEMLAPASGGWRDRLRQRLLAVDAQGREVVLAALVLGDGSGLAREDWQALQATGTVHLMVISGQHIGLLAGLIYGL
VAGLARLGAWPGRLPWLPWACGLAMAAALAYGALAGFQVPVQRACLMLATVLVWRLRFRHLGAFFPLLLALVGVLLFEPL
ASLMPGFWLSFAAVAVLIYCFSARLGGWRPWQAWSRAQWVIAIGLLPAMLALGLPVSLSAPLVNLLAVPWISLAVLPLAL
LGTATLPLAGVGESLLWLAGGLIDLMFRALGLLAEWRPPWTPPPLSLWAWTLVCAGALLLLLPRGVPLRGLGAVMLLALW
APREQVPHAEVEVWQLDVGQGLAVLLRTRHHSLLYDAGPAMGTSDLGQSVVLPTLRRLGVNQLDLMLISHAHADHAGGAL
AVQRGLPVVRVLAGEARELPAVLDAQVCSSGERWEWDGVMFSLWHWPSGKNSNDRSCVLLVEAQGERLLLAGDMEAGAER
AWLESANAARIDWLQSPHHGSRSSSTEPFIRAIAPRGVMISRGRHNGFGHPHPQVIERYRRHGLAVHDTALQGALRLRLG
RHGEVEGLRVQRRFWREPPS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=1093741 ACMGGI_RS22035 WP_414155035.1 4903881..4906103(-) (comA) [Pseudomonas sp. BNK-43-b]
ATGCGCACAGGGATGTCTGCGCTGGCGCTCGGGTTGTTGAGCCTGGGTCTCTTGCCTGCCTTGCCGTCGGTCGGATGGCT
GTTCCTTCTGTTCTTGTCGGCACTGATGTGCCTGTTCACTCGCGTCTGGCCGATAGGGTGGTTCCTGCTGGGGCTGAGCT
GGGCCTGCTGGTCGGCGCAGCAGGCCCTTGATGATCGCCTGATCGCCGAGCTCGATGGGCGCACGCTGTGGCTGGAGGGC
AGGGTGACGGGGCTGGCGACGCAGTCCGGGCGCAGCGTGCGTTTCGAGCTGGACGAGGCACAGTCCCGGCGTGCGAAGTT
ACCCCGCCGGATGCAACTGAGCTGGTTCGACGGCCCCATGGTCCGGACTGGCGAGCGCTGGCGGCTCGCGGTCAACCTCA
GACGCCCTCAGGGGCTGCTCAATCCCCATGGTCCCGACCGTGAGGCAATGCTGCTGGCACGGCGCATTGGTGCCACAGGA
ACGGTCAAGGCCGGGGAGATGCTGGCCCCGGCGAGCGGGGGCTGGCGAGACAGGCTGCGCCAGCGCTTGCTGGCGGTGGA
CGCCCAAGGGCGGGAGGTGGTGCTGGCGGCGTTGGTGCTCGGTGACGGTTCTGGGCTGGCGCGGGAGGACTGGCAGGCCT
TGCAGGCGACCGGCACCGTGCACCTGATGGTGATTTCGGGGCAGCACATTGGCTTGCTGGCGGGGCTGATCTATGGGCTG
GTTGCCGGACTGGCCCGTCTGGGTGCCTGGCCAGGGAGGCTACCGTGGTTGCCCTGGGCGTGCGGCCTGGCGATGGCGGC
AGCCTTGGCCTATGGCGCCCTGGCTGGCTTTCAGGTGCCTGTGCAGCGTGCATGCCTGATGCTGGCCACTGTCTTGGTCT
GGCGTCTGCGCTTTCGTCATCTGGGGGCGTTCTTCCCCTTGTTGCTGGCTTTGGTCGGTGTATTGCTGTTCGAGCCCCTG
GCCAGCCTGATGCCGGGCTTCTGGCTGTCTTTCGCGGCGGTGGCAGTGCTGATCTACTGCTTCAGCGCGCGTCTGGGTGG
CTGGCGGCCCTGGCAGGCCTGGAGTCGTGCTCAATGGGTGATCGCCATCGGTTTGCTGCCCGCGATGCTGGCGCTGGGTC
TGCCTGTCAGCCTCAGCGCGCCGTTGGTCAATCTCCTGGCAGTACCCTGGATCAGCCTGGCGGTGTTGCCATTGGCCCTG
CTCGGAACGGCGACGCTGCCGTTGGCAGGGGTGGGGGAATCGTTGCTGTGGCTGGCAGGTGGGTTGATCGACCTGATGTT
TCGCGCGCTCGGCCTGCTGGCCGAATGGCGTCCACCCTGGACGCCCCCGCCGCTTTCGCTGTGGGCGTGGACGCTGGTGT
GTGCGGGCGCGTTGCTGCTCTTGCTGCCACGCGGCGTGCCGCTGCGAGGACTGGGGGCGGTGATGCTGCTGGCGCTGTGG
GCGCCTCGCGAGCAGGTGCCGCACGCAGAGGTGGAAGTCTGGCAACTGGACGTGGGTCAAGGCTTGGCGGTGCTGTTGCG
CACGCGGCATCACAGCCTGCTCTACGATGCCGGGCCGGCGATGGGCACCAGTGACCTTGGGCAGAGCGTGGTGCTGCCGA
CCTTGCGCAGGCTGGGTGTCAACCAGCTCGATCTGATGCTGATCAGCCATGCACATGCCGACCACGCCGGCGGCGCTCTC
GCCGTGCAGCGCGGCCTGCCGGTGGTGCGGGTGCTGGCTGGCGAAGCACGGGAGTTGCCCGCAGTCTTGGACGCGCAGGT
GTGCAGCAGTGGTGAGCGCTGGGAGTGGGATGGCGTGATGTTCTCGCTGTGGCACTGGCCCAGTGGCAAGAACAGCAACG
ACCGCTCCTGTGTGCTGCTGGTCGAGGCCCAGGGTGAGCGCTTGCTGCTGGCTGGCGACATGGAGGCCGGTGCCGAGCGT
GCCTGGCTGGAGTCCGCCAATGCGGCGCGTATCGACTGGCTGCAGTCCCCGCATCATGGTAGCCGTAGTTCCTCCACCGA
GCCTTTCATCCGCGCCATCGCGCCGCGTGGCGTGATGATTTCCCGTGGGCGACACAATGGTTTCGGTCACCCGCACCCGC
AGGTGATCGAGCGCTATCGGCGGCATGGGCTGGCAGTGCATGACACGGCATTGCAAGGGGCGCTGCGCCTGCGACTGGGC
AGGCACGGAGAGGTCGAGGGGTTGCGTGTGCAGCGGCGCTTCTGGCGTGAGCCGCCTTCCTAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-679)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.362

97.162

0.586
  comA Ralstonia pseudosolanacearum GMI1000

35.026

100

0.364

Multiple sequence alignment