Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACMGGI_RS22030 Genome accession   NZ_CP179906
Coordinates   4903135..4903770 (-) Length   211 a.a.
NCBI ID   WP_054893125.1    Uniprot ID   A0AAD0PE55
Organism   Pseudomonas sp. BNK-43-b     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4898135..4908770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGGI_RS22000 (ACMGGI_22000) murB 4899242..4900261 (-) 1020 WP_112897749.1 UDP-N-acetylmuramate dehydrogenase -
  ACMGGI_RS22005 (ACMGGI_22005) - 4900258..4900722 (-) 465 WP_323453847.1 low molecular weight protein-tyrosine-phosphatase -
  ACMGGI_RS22010 (ACMGGI_22010) kdsB 4900722..4901486 (-) 765 WP_414155036.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACMGGI_RS22015 (ACMGGI_22015) - 4901483..4901668 (-) 186 WP_054893060.1 Trm112 family protein -
  ACMGGI_RS22020 (ACMGGI_22020) lpxK 4901710..4902705 (-) 996 WP_054893059.1 tetraacyldisaccharide 4'-kinase -
  ACMGGI_RS22025 (ACMGGI_22025) - 4902705..4903138 (-) 434 Protein_4321 ExbD/TolR family protein -
  ACMGGI_RS22030 (ACMGGI_22030) exbB 4903135..4903770 (-) 636 WP_054893125.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACMGGI_RS22035 (ACMGGI_22035) comA 4903881..4906103 (-) 2223 WP_414155035.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACMGGI_RS22040 (ACMGGI_22040) - 4906246..4906872 (+) 627 WP_151924181.1 DUF2062 domain-containing protein -
  ACMGGI_RS22045 (ACMGGI_22045) - 4906756..4907535 (-) 780 WP_054893055.1 ABC transporter permease -
  ACMGGI_RS22050 (ACMGGI_22050) - 4907532..4908464 (-) 933 WP_414155034.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22831.12 Da        Isoelectric Point: 7.3616

>NTDB_id=1093740 ACMGGI_RS22030 WP_054893125.1 4903135..4903770(-) (exbB) [Pseudomonas sp. BNK-43-b]
MWELVKSGGWMMLPIILSSVAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1093740 ACMGGI_RS22030 WP_054893125.1 4903135..4903770(-) (exbB) [Pseudomonas sp. BNK-43-b]
GTGTGGGAATTGGTCAAGTCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCCGTCGCAGCCATGGCAATTGTCGT
CGAGCGCCTGTGGACCCTGCGTGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTATGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCTTGCGCGCCGACTCCCCCTTGGGCGAGATTCTCGCCGCGGGCCTGGCAAAC
TCTCGCCATGGCCGCGAGATCATGAAGGAATGCATCGAGGAGGCCGCCTCCCGGGTCATCCACGAGCTCGAGCGCTACAT
CAGCACGCTGGGCACCATCGCTGCAATGGCGCCGTTGCTCGGTCTGCTTGGCACCGTACTTGGCATGATCGACATCTTCA
GTGCGTTCATGGGCTCGCAGATGACTGCCAACGCCGCGGTGCTCGCCGGGGGTATTTCCAAGGCGCTGGTGACCACCGCA
GCGGGCCTGATGGTTGGTATCCCCGCCGTATTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTTGGCAT
GGAGCAGGAGGCGATCAAGCTGGTCGAGGTGCTGCAGGGCGATCGCGAGGTCGAGGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment