Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACK8DD_RS17295 Genome accession   NZ_CP179880
Coordinates   3668447..3669868 (+) Length   473 a.a.
NCBI ID   WP_000840541.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain MRSN548254     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3663447..3674868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK8DD_RS17275 (ACK8DD_17275) thrC 3663702..3664841 (+) 1140 WP_415679862.1 threonine synthase -
  ACK8DD_RS17280 (ACK8DD_17280) pbpG 3664949..3665995 (-) 1047 WP_003384760.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ACK8DD_RS17285 (ACK8DD_17285) - 3666208..3666843 (+) 636 WP_000633799.1 response regulator -
  ACK8DD_RS17290 (ACK8DD_17290) pilS 3666854..3668422 (+) 1569 WP_001160329.1 sensor histidine kinase Regulator
  ACK8DD_RS17295 (ACK8DD_17295) pilR 3668447..3669868 (+) 1422 WP_000840541.1 sigma-54-dependent transcriptional regulator Regulator
  ACK8DD_RS17300 (ACK8DD_17300) - 3669872..3671056 (-) 1185 WP_000939103.1 S41 family peptidase -
  ACK8DD_RS17305 (ACK8DD_17305) gpmI 3671072..3672619 (-) 1548 WP_000128749.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ACK8DD_RS17310 (ACK8DD_17310) lptG 3672745..3673815 (-) 1071 WP_000881086.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 52982.10 Da        Isoelectric Point: 6.6688

>NTDB_id=1093371 ACK8DD_RS17295 WP_000840541.1 3668447..3669868(+) (pilR) [Acinetobacter baumannii strain MRSN548254]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGIDLVKHISQNYTNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNRQKVEHDTTENALENKLLIGRSLPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLILPPLRERGDDVLL
LANHFIQKICMEWETPPKQLTEAAETYLLQQHFPGNVRELRNMIERAITLSEDATIDISHLHPAPLRANISNPLASAAQS
IQTTVAASQAVKKLPSEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=1093371 ACK8DD_RS17295 WP_000840541.1 3668447..3669868(+) (pilR) [Acinetobacter baumannii strain MRSN548254]
ATGGCAGAACAGCAACCACTGGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACTCAGTTTCATTACGATGCGTGTT
TAACCGACTTAAACCTACCCGATGGGAGCGGGATAGATTTAGTTAAACATATCTCTCAAAATTATACTAATACTCCCATT
GCCGTTTTAACTGCCTACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGCGCTTTTGATTTTGTAAGCAAACC
GGTCAACCAAGTACATCTAGATCAATTATTACAAAAAGCCTTGAATCGGCAAAAAGTAGAGCATGATACTACCGAGAATG
CGTTAGAAAATAAATTATTAATCGGCCGTTCTCTACCCATCCAGCAGCTACGTATTGCAATTAAAAAAATTGCGCGCTCA
CAAGCACCTGTATTTGTTACTGGTGAGTCTGGAACAGGTAAAGAAGTAGTTGCCAATTTGGTTCATCGGCTGAGTAACCG
TAGTGAAGGCCCTTTTATTGCGATTAACTGCGGTGCTATTCCAACCGAACTGATGGAAAGTGAGTTGTTTGGGCATAAAA
AAGGGAGCTTTACCGGAGCAACTCAAGATAAACAAGGCCTCATTTTATCGGCACACGGTGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTACCTTTAAGTATGCAGGTCAAACTGCTCCGCGCAGTACAGGAAAAAAAGATCCGACCTGTCGGTTCAGA
TCAGGAAATCGATGTTGATTTCCGTGTGATTAGTGCAAGTCATCAAGACTTAGATTTATTAGTTCGACAGGGCAAATTCC
GTCAAGATTTATTCTTCCGTATTCATGTTATGGACCTCATATTGCCACCTCTACGTGAACGTGGCGACGATGTCCTTTTA
CTGGCCAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACGCCACCTAAACAATTAACAGAAGCAGCCGAAACTTA
TCTGCTACAGCAACACTTTCCGGGTAATGTTCGCGAATTAAGAAATATGATTGAGCGCGCAATTACCTTAAGTGAAGATG
CCACCATAGATATATCTCATTTACATCCTGCTCCACTAAGAGCGAATATTTCTAATCCTCTTGCTTCGGCTGCTCAAAGC
ATACAAACCACTGTGGCGGCTTCTCAAGCCGTAAAAAAATTACCAAGTGAAGGTCTAGAACGTTATTTAGAAAATATTGA
AAAAGATATTTTACTCAATGCACTCAATATGACTCATTGGAATCGTACCTTAGCAGCTAAAAAATTAGGAATGACTTTCC
GCTCTTTACGCTATCGTCTGAAAAAATTTGGCTTAGATACGGAGACAGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

98.732

100

0.987
  pilR Pseudomonas aeruginosa PAK

50.98

97.04

0.495

Multiple sequence alignment