Detailed information NTG1093367

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACK8DD_RS16840
• Genome accession: NZ_CP179880
• Coordinates: 3575445..3576305 (+)
• Length: 286 a.a.
• NCBI ID: WP_004748468.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain MRSN548254
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3570445..3581305

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACK8DD_RS16820 (ACK8DD_16820)	secG	3571050..3571379 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
ACK8DD_RS16825 (ACK8DD_16825)	tpiA	3571392..3572186 (-)	795	WP_000016932.1	triose-phosphate isomerase	-
ACK8DD_RS16830 (ACK8DD_16830)	pilB	3572477..3574189 (+)	1713	WP_001274987.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACK8DD_RS16835 (ACK8DD_16835)	pilC	3574219..3575445 (+)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
ACK8DD_RS16840 (ACK8DD_16840)	pilD	3575445..3576305 (+)	861	WP_004748468.1	prepilin peptidase	Machinery gene
ACK8DD_RS16845 (ACK8DD_16845)	coaE	3576307..3576903 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
ACK8DD_RS16850 (ACK8DD_16850)	-	3576900..3577814 (-)	915	WP_000075015.1	DMT family transporter	-
ACK8DD_RS16855 (ACK8DD_16855)	rlmB	3577850..3578599 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ACK8DD_RS16860 (ACK8DD_16860)	-	3578701..3579027 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
ACK8DD_RS16865 (ACK8DD_16865)	-	3579104..3580414 (-)	1311	WP_004748473.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32029.40 Da
• Isoelectric Point: 6.6664

>NTDB_id=1093367 ACK8DD_RS16840 WP_004748468.1 3575445..3576305(+) (pilD) [Acinetobacter baumannii strain MRSN548254]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IPWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=1093367 ACK8DD_RS16840 WP_004748468.1 3575445..3576305(+) (pilD) [Acinetobacter baumannii strain MRSN548254]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCAATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCCTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGACCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Acinetobacter baumannii D1279779	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	52.941	95.105	0.503
pilD	Vibrio campbellii strain DS40M4	51.661	94.755	0.49
pilD	Neisseria gonorrhoeae MS11	46.97	92.308	0.434