Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ACK8DB_RS03160 Genome accession   NZ_CP179875
Coordinates   653743..654126 (+) Length   127 a.a.
NCBI ID   WP_000389061.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain MRSN548102     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 648743..659126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK8DB_RS03150 (ACK8DB_03150) - 651644..652762 (-) 1119 WP_001260821.1 efflux RND transporter periplasmic adaptor subunit -
  ACK8DB_RS03155 (ACK8DB_03155) - 652822..653460 (-) 639 WP_001985941.1 hypothetical protein -
  ACK8DB_RS03160 (ACK8DB_03160) pilG 653743..654126 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  ACK8DB_RS03165 (ACK8DB_03165) - 654150..654512 (+) 363 WP_000101096.1 response regulator -
  ACK8DB_RS03170 (ACK8DB_03170) - 654573..655109 (+) 537 WP_396231563.1 chemotaxis protein CheW -
  ACK8DB_RS03175 (ACK8DB_03175) - 655156..657234 (+) 2079 WP_004745994.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14200.23 Da        Isoelectric Point: 4.5762

>NTDB_id=1093298 ACK8DB_RS03160 WP_000389061.1 653743..654126(+) (pilG) [Acinetobacter baumannii strain MRSN548102]
MEDAFQNLKVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSQNYQ
NIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHVSS

Nucleotide


Download         Length: 384 bp        

>NTDB_id=1093298 ACK8DB_RS03160 WP_000389061.1 653743..654126(+) (pilG) [Acinetobacter baumannii strain MRSN548102]
ATGGAAGATGCATTCCAAAATCTGAAAGTAATGGTTATTGATGACTCAAAAACTATTCGCCGTACCGCAGAAACTCTATT
GCAACGCGAAGGTTGCGAAGTGATTACTGCTGTCGATGGATTTGAAGCTTTATCTAAAATTGCTGAAGCGAATCCGGATA
TTGTTTTTGTAGATATCATGATGCCTCGTTTAGACGGTTATCAAACTTGTGCTTTGATTAAGAACTCTCAAAATTATCAG
AACATTCCCGTTATCATGCTCTCTAGTAAAGATGGTTTATTTGATCAGGCAAAAGGGCGTGTGGTAGGTTCAGATGAATA
CTTGACGAAACCTTTTAGCAAAGATGAATTGCTAAATGCGATTCGTAATCATGTAAGTTCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

100

100

1
  vicR Streptococcus mutans UA159

42.735

92.126

0.394
  pilH Synechocystis sp. PCC 6803

41.593

88.976

0.37

Multiple sequence alignment