Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   ACK8DB_RS01480 Genome accession   NZ_CP179875
Coordinates   316199..316939 (+) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain MRSN548102     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 311199..321939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK8DB_RS01465 (ACK8DB_01465) ponA 311787..314342 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  ACK8DB_RS01470 (ACK8DB_01470) pilM 314503..315561 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  ACK8DB_RS01475 (ACK8DB_01475) pilN 315561..316202 (+) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  ACK8DB_RS01480 (ACK8DB_01480) pilO 316199..316939 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACK8DB_RS01485 (ACK8DB_01485) pilP 316950..317477 (+) 528 WP_024436689.1 pilus assembly protein PilP Machinery gene
  ACK8DB_RS01490 (ACK8DB_01490) - 317540..318697 (+) 1158 Protein_284 AMIN domain-containing protein -
  ACK8DB_RS01500 (ACK8DB_01500) - 319878..320897 (+) 1020 Protein_286 type IV pilus secretin PilQ -
  ACK8DB_RS01505 (ACK8DB_01505) aroK 320909..321478 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=1093285 ACK8DB_RS01480 WP_000076101.1 316199..316939(+) (pilO) [Acinetobacter baumannii strain MRSN548102]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=1093285 ACK8DB_RS01480 WP_000076101.1 316199..316939(+) (pilO) [Acinetobacter baumannii strain MRSN548102]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTGCCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTAGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACTGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment