Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ACMGE3_RS07880 Genome accession   NZ_CP179736
Coordinates   1516758..1517108 (-) Length   116 a.a.
NCBI ID   WP_414053607.1    Uniprot ID   -
Organism   Macrococcus sp. 18KM583     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1511758..1522108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGE3_RS07850 (ACMGE3_07850) gcvPA 1512452..1513795 (-) 1344 WP_414053612.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  ACMGE3_RS07855 (ACMGE3_07855) gcvT 1513808..1514893 (-) 1086 WP_414056162.1 glycine cleavage system aminomethyltransferase GcvT -
  ACMGE3_RS07860 (ACMGE3_07860) - 1515027..1515533 (-) 507 WP_414055029.1 shikimate kinase -
  ACMGE3_RS07865 (ACMGE3_07865) comGF 1515714..1516145 (-) 432 WP_414055030.1 competence type IV pilus minor pilin ComGF -
  ACMGE3_RS07870 (ACMGE3_07870) - 1516108..1516353 (-) 246 WP_414055031.1 hypothetical protein -
  ACMGE3_RS07875 (ACMGE3_07875) - 1516340..1516810 (-) 471 WP_414053608.1 hypothetical protein -
  ACMGE3_RS07880 (ACMGE3_07880) comGC 1516758..1517108 (-) 351 WP_414053607.1 competence type IV pilus major pilin ComGC Machinery gene
  ACMGE3_RS07885 (ACMGE3_07885) comGB 1517120..1518157 (-) 1038 WP_414055032.1 competence type IV pilus assembly protein ComGB -
  ACMGE3_RS07890 (ACMGE3_07890) comGA 1518144..1519112 (-) 969 WP_414055033.1 competence type IV pilus ATPase ComGA Machinery gene
  ACMGE3_RS07895 (ACMGE3_07895) - 1519325..1519573 (+) 249 WP_233680344.1 DUF2626 domain-containing protein -
  ACMGE3_RS07900 (ACMGE3_07900) - 1519609..1520238 (-) 630 WP_414055034.1 MBL fold metallo-hydrolase -
  ACMGE3_RS07905 (ACMGE3_07905) - 1520331..1520570 (+) 240 WP_414046287.1 DUF2759 domain-containing protein -
  ACMGE3_RS07910 (ACMGE3_07910) - 1520604..1520915 (-) 312 WP_414053603.1 MTH1187 family thiamine-binding protein -
  ACMGE3_RS07915 (ACMGE3_07915) - 1520915..1521886 (-) 972 WP_414055035.1 ROK family glucokinase -
  ACMGE3_RS07920 (ACMGE3_07920) - 1521883..1522074 (-) 192 WP_414055036.1 YqgQ family protein -

Sequence

Protein


Download         Length: 116 a.a.        Molecular weight: 13012.40 Da        Isoelectric Point: 9.1511

>NTDB_id=1093157 ACMGE3_RS07880 WP_414053607.1 1516758..1517108(-) (comGC) [Macrococcus sp. 18KM583]
MLNTYLNRFMQMFSKQFKKKDGFTLIEMLLVLLVISVLIIVIIPNIAKQSDNVQNTGCKAQVKMVQGQIEAFKLQNGKTP
ASINELVPEFLKDTQVKCKNGDPIQIEDGEAVVQKA

Nucleotide


Download         Length: 351 bp        

>NTDB_id=1093157 ACMGE3_RS07880 WP_414053607.1 1516758..1517108(-) (comGC) [Macrococcus sp. 18KM583]
ATGTTAAATACTTATTTGAATCGTTTCATGCAGATGTTTTCTAAGCAATTTAAAAAGAAGGACGGATTTACACTCATTGA
AATGTTGCTGGTTTTATTGGTGATTTCTGTATTGATTATCGTGATTATCCCAAATATTGCTAAACAATCTGATAATGTGC
AAAATACAGGCTGTAAGGCACAGGTTAAGATGGTCCAAGGTCAAATAGAAGCCTTTAAGCTGCAAAATGGTAAAACACCG
GCAAGCATTAATGAATTAGTTCCGGAGTTCTTAAAGGATACACAAGTGAAGTGTAAAAATGGTGACCCAATTCAAATTGA
AGATGGCGAAGCAGTTGTTCAAAAAGCTTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(18-42)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

57.282

88.793

0.509
  comGC Staphylococcus aureus N315

57.282

88.793

0.509

Multiple sequence alignment