Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ACMGE6_RS09670 Genome accession   NZ_CP179732
Coordinates   1839145..1839495 (+) Length   116 a.a.
NCBI ID   WP_414053607.1    Uniprot ID   -
Organism   Macrococcus sp. 21KM1573     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1834145..1844495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGE6_RS09630 (ACMGE6_09630) - 1834178..1834369 (+) 192 WP_414046284.1 YqgQ family protein -
  ACMGE6_RS09635 (ACMGE6_09635) - 1834366..1835337 (+) 972 WP_414053602.1 ROK family glucokinase -
  ACMGE6_RS09640 (ACMGE6_09640) - 1835337..1835648 (+) 312 WP_414053603.1 MTH1187 family thiamine-binding protein -
  ACMGE6_RS09645 (ACMGE6_09645) - 1835682..1835921 (-) 240 WP_414046287.1 DUF2759 domain-containing protein -
  ACMGE6_RS09650 (ACMGE6_09650) - 1836014..1836643 (+) 630 WP_414053604.1 MBL fold metallo-hydrolase -
  ACMGE6_RS09655 (ACMGE6_09655) - 1836680..1836928 (-) 249 WP_233680344.1 DUF2626 domain-containing protein -
  ACMGE6_RS09660 (ACMGE6_09660) comGA 1837141..1838109 (+) 969 WP_414053605.1 competence type IV pilus ATPase ComGA Machinery gene
  ACMGE6_RS09665 (ACMGE6_09665) comGB 1838096..1839133 (+) 1038 WP_414053606.1 competence type IV pilus assembly protein ComGB -
  ACMGE6_RS09670 (ACMGE6_09670) comGC 1839145..1839495 (+) 351 WP_414053607.1 competence type IV pilus major pilin ComGC Machinery gene
  ACMGE6_RS09675 (ACMGE6_09675) - 1839443..1839913 (+) 471 WP_414053608.1 hypothetical protein -
  ACMGE6_RS09680 (ACMGE6_09680) - 1839924..1840145 (+) 222 WP_414053609.1 hypothetical protein -
  ACMGE6_RS09685 (ACMGE6_09685) comGF 1840108..1840539 (+) 432 WP_414053610.1 competence type IV pilus minor pilin ComGF -
  ACMGE6_RS09690 (ACMGE6_09690) - 1840720..1841226 (+) 507 WP_414053611.1 shikimate kinase -
  ACMGE6_RS09695 (ACMGE6_09695) gcvT 1841360..1842445 (+) 1086 WP_414054851.1 glycine cleavage system aminomethyltransferase GcvT -
  ACMGE6_RS09700 (ACMGE6_09700) gcvPA 1842458..1843801 (+) 1344 WP_414053612.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 116 a.a.        Molecular weight: 13012.40 Da        Isoelectric Point: 9.1511

>NTDB_id=1093070 ACMGE6_RS09670 WP_414053607.1 1839145..1839495(+) (comGC) [Macrococcus sp. 21KM1573]
MLNTYLNRFMQMFSKQFKKKDGFTLIEMLLVLLVISVLIIVIIPNIAKQSDNVQNTGCKAQVKMVQGQIEAFKLQNGKTP
ASINELVPEFLKDTQVKCKNGDPIQIEDGEAVVQKA

Nucleotide


Download         Length: 351 bp        

>NTDB_id=1093070 ACMGE6_RS09670 WP_414053607.1 1839145..1839495(+) (comGC) [Macrococcus sp. 21KM1573]
ATGTTAAATACTTATTTGAATCGTTTCATGCAGATGTTTTCTAAGCAATTTAAAAAGAAGGACGGATTTACACTCATTGA
AATGTTGCTGGTTTTATTGGTGATTTCTGTATTGATTATCGTGATTATCCCAAATATTGCTAAACAATCTGATAATGTAC
AAAATACAGGCTGTAAGGCACAGGTTAAGATGGTCCAAGGTCAAATAGAAGCCTTTAAGCTGCAAAATGGTAAAACACCG
GCAAGCATTAATGAATTAGTTCCGGAGTTCTTAAAGGATACACAAGTGAAGTGTAAAAATGGTGACCCAATTCAAATTGA
AGATGGCGAAGCAGTTGTTCAAAAAGCTTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(18-42)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

57.282

88.793

0.509
  comGC Staphylococcus aureus N315

57.282

88.793

0.509

Multiple sequence alignment