Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACMGE8_RS08675 Genome accession   NZ_CP179728
Coordinates   1597463..1597990 (+) Length   175 a.a.
NCBI ID   WP_414042060.1    Uniprot ID   -
Organism   Macrococcus sp. 18KM676     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1597463..1618673 1597463..1597990 within 0


Gene organization within MGE regions


Location: 1597463..1618673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGE8_RS08675 (ACMGE8_08675) ssbA 1597463..1597990 (+) 528 WP_414042060.1 single-stranded DNA-binding protein Machinery gene
  ACMGE8_RS08680 (ACMGE8_08680) rpsR 1598025..1598267 (+) 243 WP_414042061.1 30S ribosomal protein S18 -
  ACMGE8_RS08685 (ACMGE8_08685) - 1598508..1599056 (+) 549 WP_414048905.1 YfbU family protein -
  ACMGE8_RS08690 (ACMGE8_08690) - 1599111..1599719 (-) 609 WP_414052079.1 GNAT family N-acetyltransferase -
  ACMGE8_RS08695 (ACMGE8_08695) - 1599844..1600833 (-) 990 WP_414052080.1 YsnF/AvaK domain-containing protein -
  ACMGE8_RS08700 (ACMGE8_08700) xpt 1601418..1601993 (+) 576 WP_414042065.1 xanthine phosphoribosyltransferase -
  ACMGE8_RS08705 (ACMGE8_08705) - 1601995..1603263 (+) 1269 WP_414052081.1 nucleobase:cation symporter-2 family protein -
  ACMGE8_RS08710 (ACMGE8_08710) guaB 1603297..1604769 (+) 1473 WP_414042067.1 IMP dehydrogenase -
  ACMGE8_RS08715 (ACMGE8_08715) guaA 1604797..1606338 (+) 1542 WP_414052082.1 glutamine-hydrolyzing GMP synthase -
  ACMGE8_RS08720 (ACMGE8_08720) - 1606551..1607537 (-) 987 WP_414052083.1 Abi family protein -
  ACMGE8_RS08725 (ACMGE8_08725) - 1607552..1608793 (-) 1242 WP_414052084.1 tyrosine-type recombinase/integrase -
  ACMGE8_RS08730 (ACMGE8_08730) - 1608807..1609463 (-) 657 WP_414052085.1 helix-turn-helix domain-containing protein -
  ACMGE8_RS08735 (ACMGE8_08735) - 1609630..1609833 (+) 204 WP_414052086.1 helix-turn-helix domain-containing protein -
  ACMGE8_RS08740 (ACMGE8_08740) - 1609833..1610471 (+) 639 WP_414052087.1 Bro-N domain-containing protein -
  ACMGE8_RS08745 (ACMGE8_08745) - 1610645..1610920 (+) 276 WP_414052088.1 helix-turn-helix domain-containing protein -
  ACMGE8_RS08750 (ACMGE8_08750) - 1610984..1611160 (+) 177 WP_414052089.1 hypothetical protein -
  ACMGE8_RS08755 (ACMGE8_08755) - 1611179..1611520 (+) 342 WP_414052090.1 hypothetical protein -
  ACMGE8_RS08760 (ACMGE8_08760) - 1611520..1611810 (+) 291 WP_414052091.1 hypothetical protein -
  ACMGE8_RS08765 (ACMGE8_08765) - 1611950..1612807 (+) 858 WP_414052092.1 primase alpha helix C-terminal domain-containing protein -
  ACMGE8_RS08770 (ACMGE8_08770) - 1612782..1614134 (+) 1353 WP_414052093.1 phage/plasmid primase, P4 family -
  ACMGE8_RS08775 (ACMGE8_08775) - 1614412..1614666 (+) 255 WP_414052094.1 hypothetical protein -
  ACMGE8_RS08780 (ACMGE8_08780) - 1615014..1615583 (+) 570 WP_414052095.1 hypothetical protein -
  ACMGE8_RS08785 (ACMGE8_08785) - 1615614..1616117 (+) 504 WP_414052096.1 pathogenicity island protein -
  ACMGE8_RS08790 (ACMGE8_08790) - 1616114..1616455 (+) 342 WP_414052097.1 sigma factor-like helix-turn-helix DNA-binding protein -
  ACMGE8_RS08795 (ACMGE8_08795) - 1617137..1617574 (+) 438 WP_414052098.1 Panacea domain-containing protein -
  ACMGE8_RS08800 (ACMGE8_08800) - 1617567..1618673 (+) 1107 WP_414052099.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19412.00 Da        Isoelectric Point: 4.6856

>NTDB_id=1092994 ACMGE8_RS08675 WP_414042060.1 1597463..1597990(+) (ssbA) [Macrococcus sp. 18KM676]
MLNRVVLVGRLTKDPEYRVTPSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLNKGSLAGVDGRLQSR
SYDNQEGRRVYVTEVICDSVQFLEPKNANQSRSNNDPSQDYSSYDQGNYGQQSQGQNYQPSNNNNQQQSNASTPSTNPFA
NATGPIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1092994 ACMGE8_RS08675 WP_414042060.1 1597463..1597990(+) (ssbA) [Macrococcus sp. 18KM676]
TTGCTTAACCGAGTTGTATTAGTAGGTCGATTAACTAAAGATCCAGAATACAGAGTCACACCATCAGGCGTGTCAGTAGC
TACATTTACATTAGCGGTTAACCGTACATTTACAAATGCTCAAGGTGAAAGACAGGCTGATTTTATCAATTGTGTCGTTT
TCCGTAAGCAAGCTGAAAATGTGAATAACTTCTTAAACAAAGGTAGTTTAGCTGGGGTAGATGGCAGATTGCAATCACGT
AGTTATGATAATCAAGAAGGCCGTAGAGTATATGTAACGGAAGTTATTTGTGATTCAGTACAGTTCTTAGAACCGAAGAA
TGCAAATCAAAGCCGTTCAAATAACGATCCAAGTCAAGACTATTCTAGTTATGACCAAGGTAATTATGGACAACAATCTC
AAGGTCAAAATTATCAACCGAGCAATAATAACAATCAACAACAATCAAATGCATCAACACCATCAACGAACCCATTTGCT
AACGCAACTGGACCGATTGATATCAGTGATGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.778

100

0.646
  ssb Latilactobacillus sakei subsp. sakei 23K

53.889

100

0.554
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

60.571

0.36

Multiple sequence alignment