Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ACMGE9_RS11665 Genome accession   NZ_CP179727
Coordinates   2208139..2208498 (+) Length   119 a.a.
NCBI ID   WP_414042934.1    Uniprot ID   -
Organism   Macrococcus sp. EM39E     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2203139..2213498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGE9_RS11625 (ACMGE9_11625) - 2203162..2203353 (+) 192 WP_414042927.1 YqgQ family protein -
  ACMGE9_RS11630 (ACMGE9_11630) - 2203350..2204321 (+) 972 WP_414042928.1 ROK family glucokinase -
  ACMGE9_RS11635 (ACMGE9_11635) - 2204321..2204632 (+) 312 WP_414042929.1 MTH1187 family thiamine-binding protein -
  ACMGE9_RS11640 (ACMGE9_11640) - 2204675..2204914 (-) 240 WP_414042930.1 DUF2759 domain-containing protein -
  ACMGE9_RS11645 (ACMGE9_11645) - 2205007..2205636 (+) 630 WP_414042931.1 MBL fold metallo-hydrolase -
  ACMGE9_RS11650 (ACMGE9_11650) - 2205675..2205923 (-) 249 WP_099578437.1 DUF2626 domain-containing protein -
  ACMGE9_RS11655 (ACMGE9_11655) comGA 2206135..2207103 (+) 969 WP_414042932.1 competence type IV pilus ATPase ComGA Machinery gene
  ACMGE9_RS11660 (ACMGE9_11660) comGB 2207090..2208127 (+) 1038 WP_414042933.1 competence type IV pilus assembly protein ComGB -
  ACMGE9_RS11665 (ACMGE9_11665) comGC 2208139..2208498 (+) 360 WP_414042934.1 competence type IV pilus major pilin ComGC Machinery gene
  ACMGE9_RS11670 (ACMGE9_11670) - 2208446..2208916 (+) 471 WP_414042935.1 hypothetical protein -
  ACMGE9_RS11675 (ACMGE9_11675) - 2208903..2209148 (+) 246 WP_414042936.1 hypothetical protein -
  ACMGE9_RS11680 (ACMGE9_11680) comGF 2209093..2209542 (+) 450 WP_414042937.1 competence type IV pilus minor pilin ComGF -
  ACMGE9_RS11685 (ACMGE9_11685) - 2209723..2210229 (+) 507 WP_414042938.1 shikimate kinase -
  ACMGE9_RS11690 (ACMGE9_11690) gcvT 2210367..2211452 (+) 1086 WP_414044501.1 glycine cleavage system aminomethyltransferase GcvT -
  ACMGE9_RS11695 (ACMGE9_11695) gcvPA 2211465..2212808 (+) 1344 WP_414042939.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13205.40 Da        Isoelectric Point: 9.6829

>NTDB_id=1092974 ACMGE9_RS11665 WP_414042934.1 2208139..2208498(+) (comGC) [Macrococcus sp. EM39E]
MFSTINNKLNSLVQSFKQQFKKRDGFTLIEMLLVLLVISVLIIVIIPNIAKQSDNVQNTGCTAQVKMVQGQIEAYKLQNG
KSPTSINELVPEFLKENQVKCKNGNPINIDNGEAVAQKS

Nucleotide


Download         Length: 360 bp        

>NTDB_id=1092974 ACMGE9_RS11665 WP_414042934.1 2208139..2208498(+) (comGC) [Macrococcus sp. EM39E]
ATGTTTTCAACAATAAATAATAAATTAAATTCTTTGGTTCAATCTTTTAAGCAACAATTTAAAAAGAGGGATGGATTTAC
ATTAATAGAAATGTTACTCGTATTACTCGTTATTTCAGTATTAATTATCGTCATTATCCCAAACATCGCAAAACAATCTG
ATAATGTACAAAATACAGGGTGCACAGCACAAGTAAAAATGGTTCAAGGTCAAATAGAAGCTTACAAGTTACAAAATGGA
AAATCCCCAACATCTATTAATGAATTAGTGCCGGAATTTTTAAAAGAAAATCAGGTGAAGTGTAAAAATGGTAATCCAAT
TAATATTGACAATGGCGAAGCGGTCGCTCAAAAATCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(21-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

61.224

82.353

0.504
  comGC Staphylococcus aureus N315

61.224

82.353

0.504

Multiple sequence alignment