Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACMGE9_RS06725 Genome accession   NZ_CP179727
Coordinates   1277956..1278483 (+) Length   175 a.a.
NCBI ID   WP_414042060.1    Uniprot ID   -
Organism   Macrococcus sp. EM39E     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1272956..1283483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGE9_RS06690 (ACMGE9_06690) - 1273379..1274140 (+) 762 WP_414042053.1 ParA family protein -
  ACMGE9_RS06695 (ACMGE9_06695) - 1274133..1274981 (+) 849 WP_414042054.1 ParB/RepB/Spo0J family partition protein -
  ACMGE9_RS06700 (ACMGE9_06700) - 1274982..1275878 (+) 897 WP_414042055.1 mechanosensitive ion channel family protein -
  ACMGE9_RS06705 (ACMGE9_06705) - 1275868..1276059 (+) 192 WP_414042056.1 DUF951 domain-containing protein -
  ACMGE9_RS06710 (ACMGE9_06710) ychF 1276071..1277171 (+) 1101 WP_414042057.1 redox-regulated ATPase YchF -
  ACMGE9_RS06715 (ACMGE9_06715) - 1277193..1277516 (+) 324 WP_414042058.1 hypothetical protein -
  ACMGE9_RS06720 (ACMGE9_06720) rpsF 1277641..1277931 (+) 291 WP_414042059.1 30S ribosomal protein S6 -
  ACMGE9_RS06725 (ACMGE9_06725) ssbA 1277956..1278483 (+) 528 WP_414042060.1 single-stranded DNA-binding protein Machinery gene
  ACMGE9_RS06730 (ACMGE9_06730) rpsR 1278518..1278760 (+) 243 WP_414042061.1 30S ribosomal protein S18 -
  ACMGE9_RS06735 (ACMGE9_06735) - 1279001..1279549 (+) 549 WP_414042062.1 YfbU family protein -
  ACMGE9_RS06740 (ACMGE9_06740) - 1279604..1280212 (-) 609 WP_414042063.1 GNAT family N-acetyltransferase -
  ACMGE9_RS06745 (ACMGE9_06745) - 1280338..1281327 (-) 990 WP_414042064.1 YsnF/AvaK domain-containing protein -
  ACMGE9_RS06750 (ACMGE9_06750) xpt 1281911..1282486 (+) 576 WP_414042065.1 xanthine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19412.00 Da        Isoelectric Point: 4.6856

>NTDB_id=1092957 ACMGE9_RS06725 WP_414042060.1 1277956..1278483(+) (ssbA) [Macrococcus sp. EM39E]
MLNRVVLVGRLTKDPEYRVTPSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLNKGSLAGVDGRLQSR
SYDNQEGRRVYVTEVICDSVQFLEPKNANQSRSNNDPSQDYSSYDQGNYGQQSQGQNYQPSNNNNQQQSNASTPSTNPFA
NATGPIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1092957 ACMGE9_RS06725 WP_414042060.1 1277956..1278483(+) (ssbA) [Macrococcus sp. EM39E]
TTGCTTAACCGAGTTGTATTAGTAGGTCGATTAACTAAAGATCCAGAATACAGAGTCACACCATCAGGCGTGTCAGTAGC
TACATTTACATTAGCGGTTAACCGTACATTTACAAATGCTCAAGGTGAAAGACAGGCTGATTTTATCAATTGTGTCGTTT
TCCGTAAGCAAGCTGAAAATGTGAATAACTTCTTAAACAAAGGTAGTTTAGCTGGGGTAGATGGCAGATTGCAATCACGT
AGTTATGATAATCAAGAAGGCCGTAGAGTATATGTAACGGAAGTTATTTGTGATTCAGTACAGTTCTTAGAACCGAAGAA
TGCAAATCAAAGCCGTTCAAATAACGATCCAAGTCAAGACTATTCTAGTTATGACCAAGGTAATTATGGACAACAATCTC
AAGGTCAAAATTATCAACCGAGCAATAATAACAATCAACAACAATCAAATGCATCAACACCATCAACGAACCCATTTGCT
AACGCAACTGGACCGATTGATATCAGTGATGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.778

100

0.646
  ssb Latilactobacillus sakei subsp. sakei 23K

53.889

100

0.554
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

60.571

0.36

Multiple sequence alignment