Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ACMGFB_RS10300 | Genome accession | NZ_CP179724 |
| Coordinates | 1921994..1922521 (-) | Length | 175 a.a. |
| NCBI ID | WP_414042060.1 | Uniprot ID | - |
| Organism | Macrococcus sp. 21M1142 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1887942..1927098 | 1921994..1922521 | within | 0 |
Gene organization within MGE regions
Location: 1887942..1927098
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACMGFB_RS10180 (ACMGFB_10180) | - | 1887942..1888310 (-) | 369 | WP_414048893.1 | nuclear transport factor 2 family protein | - |
| ACMGFB_RS10185 (ACMGFB_10185) | - | 1888433..1902862 (-) | 14430 | WP_414048894.1 | SdrD B-like domain-containing protein | - |
| ACMGFB_RS10190 (ACMGFB_10190) | erm(45) | 1903484..1904221 (-) | 738 | WP_063844522.1 | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(45) | - |
| ACMGFB_RS10195 (ACMGFB_10195) | - | 1904338..1904420 (-) | 83 | Protein_1972 | 23S rRNA methyltransferase attenuation leader peptide | - |
| ACMGFB_RS10200 (ACMGFB_10200) | - | 1904622..1905152 (-) | 531 | WP_133420220.1 | hypothetical protein | - |
| ACMGFB_RS10205 (ACMGFB_10205) | - | 1905492..1905746 (-) | 255 | WP_414048895.1 | hypothetical protein | - |
| ACMGFB_RS10210 (ACMGFB_10210) | - | 1906017..1907369 (-) | 1353 | WP_414048896.1 | phage/plasmid primase, P4 family | - |
| ACMGFB_RS10215 (ACMGFB_10215) | - | 1907344..1908225 (-) | 882 | WP_414048897.1 | primase alpha helix C-terminal domain-containing protein | - |
| ACMGFB_RS10220 (ACMGFB_10220) | - | 1908345..1908596 (-) | 252 | WP_133420216.1 | hypothetical protein | - |
| ACMGFB_RS10225 (ACMGFB_10225) | - | 1908598..1908942 (-) | 345 | WP_123808068.1 | hypothetical protein | - |
| ACMGFB_RS10230 (ACMGFB_10230) | - | 1908955..1909230 (-) | 276 | WP_123808067.1 | helix-turn-helix domain-containing protein | - |
| ACMGFB_RS10235 (ACMGFB_10235) | - | 1909404..1910042 (-) | 639 | WP_414048898.1 | Bro-N domain-containing protein | - |
| ACMGFB_RS10240 (ACMGFB_10240) | - | 1910081..1910308 (-) | 228 | WP_224187423.1 | helix-turn-helix transcriptional regulator | - |
| ACMGFB_RS10245 (ACMGFB_10245) | - | 1910420..1911190 (+) | 771 | WP_414048899.1 | helix-turn-helix domain-containing protein | - |
| ACMGFB_RS10250 (ACMGFB_10250) | - | 1911194..1912435 (+) | 1242 | WP_414048900.1 | tyrosine-type recombinase/integrase | - |
| ACMGFB_RS10255 (ACMGFB_10255) | - | 1912437..1913429 (+) | 993 | WP_123808066.1 | Abi family protein | - |
| ACMGFB_RS10260 (ACMGFB_10260) | guaA | 1913646..1915187 (-) | 1542 | WP_414048901.1 | glutamine-hydrolyzing GMP synthase | - |
| ACMGFB_RS10265 (ACMGFB_10265) | guaB | 1915215..1916687 (-) | 1473 | WP_414042067.1 | IMP dehydrogenase | - |
| ACMGFB_RS10270 (ACMGFB_10270) | - | 1916721..1917989 (-) | 1269 | WP_414048902.1 | nucleobase:cation symporter-2 family protein | - |
| ACMGFB_RS10275 (ACMGFB_10275) | - | 1917991..1918566 (-) | 576 | WP_414048903.1 | xanthine phosphoribosyltransferase | - |
| ACMGFB_RS10280 (ACMGFB_10280) | - | 1919151..1920140 (+) | 990 | WP_414048904.1 | YsnF/AvaK domain-containing protein | - |
| ACMGFB_RS10285 (ACMGFB_10285) | - | 1920265..1920873 (+) | 609 | WP_414042063.1 | GNAT family N-acetyltransferase | - |
| ACMGFB_RS10290 (ACMGFB_10290) | - | 1920928..1921476 (-) | 549 | WP_414048905.1 | YfbU family protein | - |
| ACMGFB_RS10295 (ACMGFB_10295) | rpsR | 1921717..1921959 (-) | 243 | WP_414042061.1 | 30S ribosomal protein S18 | - |
| ACMGFB_RS10300 (ACMGFB_10300) | ssbA | 1921994..1922521 (-) | 528 | WP_414042060.1 | single-stranded DNA-binding protein | Machinery gene |
| ACMGFB_RS10305 (ACMGFB_10305) | rpsF | 1922546..1922836 (-) | 291 | WP_414042059.1 | 30S ribosomal protein S6 | - |
| ACMGFB_RS10310 (ACMGFB_10310) | - | 1922961..1923284 (-) | 324 | WP_414042058.1 | hypothetical protein | - |
| ACMGFB_RS10315 (ACMGFB_10315) | ychF | 1923306..1924406 (-) | 1101 | WP_414042057.1 | redox-regulated ATPase YchF | - |
| ACMGFB_RS10320 (ACMGFB_10320) | - | 1924418..1924609 (-) | 192 | WP_414042056.1 | DUF951 domain-containing protein | - |
| ACMGFB_RS10325 (ACMGFB_10325) | - | 1924599..1925495 (-) | 897 | WP_414048906.1 | mechanosensitive ion channel family protein | - |
| ACMGFB_RS10330 (ACMGFB_10330) | - | 1925496..1926344 (-) | 849 | WP_414042054.1 | ParB/RepB/Spo0J family partition protein | - |
| ACMGFB_RS10335 (ACMGFB_10335) | - | 1926337..1927098 (-) | 762 | WP_414042053.1 | ParA family protein | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19412.00 Da Isoelectric Point: 4.6856
>NTDB_id=1092907 ACMGFB_RS10300 WP_414042060.1 1921994..1922521(-) (ssbA) [Macrococcus sp. 21M1142]
MLNRVVLVGRLTKDPEYRVTPSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLNKGSLAGVDGRLQSR
SYDNQEGRRVYVTEVICDSVQFLEPKNANQSRSNNDPSQDYSSYDQGNYGQQSQGQNYQPSNNNNQQQSNASTPSTNPFA
NATGPIDISDDDLPF
MLNRVVLVGRLTKDPEYRVTPSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLNKGSLAGVDGRLQSR
SYDNQEGRRVYVTEVICDSVQFLEPKNANQSRSNNDPSQDYSSYDQGNYGQQSQGQNYQPSNNNNQQQSNASTPSTNPFA
NATGPIDISDDDLPF
Nucleotide
Download Length: 528 bp
>NTDB_id=1092907 ACMGFB_RS10300 WP_414042060.1 1921994..1922521(-) (ssbA) [Macrococcus sp. 21M1142]
TTGCTTAACCGAGTTGTATTAGTAGGTCGATTAACTAAAGATCCAGAATACAGAGTCACACCATCAGGCGTGTCAGTAGC
TACATTTACATTAGCGGTTAACCGTACATTTACAAATGCTCAAGGTGAAAGACAGGCTGATTTTATCAATTGTGTCGTTT
TCCGTAAGCAAGCTGAAAATGTGAATAACTTCTTAAACAAAGGTAGTTTAGCTGGGGTAGATGGCAGATTGCAATCACGT
AGTTATGATAATCAAGAAGGCCGTAGAGTATATGTAACGGAAGTTATTTGTGATTCAGTACAGTTCTTAGAACCGAAGAA
TGCAAATCAAAGCCGTTCAAATAACGATCCAAGTCAAGACTATTCTAGTTATGACCAAGGTAATTATGGACAACAATCTC
AAGGTCAAAATTATCAACCGAGCAATAATAACAATCAACAACAATCAAATGCATCAACACCATCAACGAACCCATTTGCT
AACGCAACTGGACCGATTGATATCAGTGATGATGATTTACCGTTCTAA
TTGCTTAACCGAGTTGTATTAGTAGGTCGATTAACTAAAGATCCAGAATACAGAGTCACACCATCAGGCGTGTCAGTAGC
TACATTTACATTAGCGGTTAACCGTACATTTACAAATGCTCAAGGTGAAAGACAGGCTGATTTTATCAATTGTGTCGTTT
TCCGTAAGCAAGCTGAAAATGTGAATAACTTCTTAAACAAAGGTAGTTTAGCTGGGGTAGATGGCAGATTGCAATCACGT
AGTTATGATAATCAAGAAGGCCGTAGAGTATATGTAACGGAAGTTATTTGTGATTCAGTACAGTTCTTAGAACCGAAGAA
TGCAAATCAAAGCCGTTCAAATAACGATCCAAGTCAAGACTATTCTAGTTATGACCAAGGTAATTATGGACAACAATCTC
AAGGTCAAAATTATCAACCGAGCAATAATAACAATCAACAACAATCAAATGCATCAACACCATCAACGAACCCATTTGCT
AACGCAACTGGACCGATTGATATCAGTGATGATGATTTACCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
62.778 |
100 |
0.646 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
53.889 |
100 |
0.554 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
60.571 |
0.36 |