Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACK25W_RS18335 Genome accession   NZ_CP179722
Coordinates   3594723..3595268 (-) Length   181 a.a.
NCBI ID   WP_034660649.1    Uniprot ID   -
Organism   Bacillus pumilus strain FJAT-56819     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3589723..3600268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK25W_RS18310 (ACK25W_18310) - 3589987..3590595 (-) 609 WP_060597699.1 alpha/beta hydrolase -
  ACK25W_RS18315 (ACK25W_18315) - 3590592..3591563 (-) 972 WP_066031466.1 ring-cleaving dioxygenase -
  ACK25W_RS18320 (ACK25W_18320) - 3591755..3593272 (-) 1518 WP_414051695.1 ABC transporter permease/substrate-binding protein -
  ACK25W_RS18325 (ACK25W_18325) - 3593265..3594230 (-) 966 WP_106073038.1 ABC transporter ATP-binding protein -
  ACK25W_RS18330 (ACK25W_18330) rpsR 3594443..3594682 (-) 240 WP_008347556.1 30S ribosomal protein S18 -
  ACK25W_RS18335 (ACK25W_18335) ssbA 3594723..3595268 (-) 546 WP_034660649.1 single-stranded DNA-binding protein SsbA Machinery gene
  ACK25W_RS18340 (ACK25W_18340) rpsF 3595305..3595592 (-) 288 WP_003215073.1 30S ribosomal protein S6 -
  ACK25W_RS18345 (ACK25W_18345) ychF 3595701..3596801 (-) 1101 WP_034660650.1 redox-regulated ATPase YchF -
  ACK25W_RS18350 (ACK25W_18350) - 3597018..3597224 (-) 207 WP_012011910.1 DUF951 domain-containing protein -
  ACK25W_RS18355 (ACK25W_18355) - 3597519..3598838 (+) 1320 WP_106038845.1 hydrolase -
  ACK25W_RS18360 (ACK25W_18360) - 3598854..3599264 (+) 411 WP_414051696.1 hypothetical protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19733.28 Da        Isoelectric Point: 4.6109

>NTDB_id=1092882 ACK25W_RS18335 WP_034660649.1 3594723..3595268(-) (ssbA) [Bacillus pumilus strain FJAT-56819]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPNQNPYGNQSNQQNRNQGNSF
NDDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=1092882 ACK25W_RS18335 WP_034660649.1 3594723..3595268(-) (ssbA) [Bacillus pumilus strain FJAT-56819]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ATCCATTCGGAAATGAACCAAATCAAAATCCATATGGCAATCAGAGCAACCAACAAAATCGTAATCAGGGAAATAGCTTC
AATGATGACCCATTTGCGAATGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

84.53

100

0.845
  ssb Latilactobacillus sakei subsp. sakei 23K

55.08

100

0.569
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.564

0.376

Multiple sequence alignment