Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACK25W_RS14305 Genome accession   NZ_CP179722
Coordinates   2782394..2783035 (-) Length   213 a.a.
NCBI ID   WP_060597210.1    Uniprot ID   -
Organism   Bacillus pumilus strain FJAT-56819     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2777394..2788035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK25W_RS14270 (ACK25W_14270) - 2778506..2778937 (+) 432 WP_066030470.1 Na(+)/H(+) antiporter subunit B -
  ACK25W_RS14275 (ACK25W_14275) - 2778937..2779278 (+) 342 WP_066030469.1 Na(+)/H(+) antiporter subunit C -
  ACK25W_RS14280 (ACK25W_14280) - 2779271..2780749 (+) 1479 WP_066030468.1 Na+/H+ antiporter subunit D -
  ACK25W_RS14285 (ACK25W_14285) - 2780756..2781235 (+) 480 WP_278022938.1 Na+/H+ antiporter subunit E -
  ACK25W_RS14290 (ACK25W_14290) - 2781235..2781516 (+) 282 WP_012011105.1 Na(+)/H(+) antiporter subunit F1 -
  ACK25W_RS14295 (ACK25W_14295) mnhG 2781500..2781874 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  ACK25W_RS14300 (ACK25W_14300) - 2781981..2782370 (-) 390 WP_003213775.1 hotdog fold thioesterase -
  ACK25W_RS14305 (ACK25W_14305) comA 2782394..2783035 (-) 642 WP_060597210.1 response regulator transcription factor Regulator
  ACK25W_RS14310 (ACK25W_14310) comP 2783116..2785428 (-) 2313 WP_066030466.1 ATP-binding protein Regulator
  ACK25W_RS14315 (ACK25W_14315) comX 2785485..2785652 (-) 168 WP_081311380.1 competence pheromone ComX -
  ACK25W_RS14320 (ACK25W_14320) - 2785649..2786563 (-) 915 WP_081311379.1 polyprenyl synthetase family protein -
  ACK25W_RS14325 (ACK25W_14325) degQ 2786715..2786855 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  ACK25W_RS14330 (ACK25W_14330) - 2787361..2787714 (+) 354 WP_060597216.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24139.58 Da        Isoelectric Point: 4.5688

>NTDB_id=1092868 ACK25W_RS14305 WP_060597210.1 2782394..2783035(-) (comA) [Bacillus pumilus strain FJAT-56819]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQLVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1092868 ACK25W_RS14305 WP_060597210.1 2782394..2783035(-) (comA) [Bacillus pumilus strain FJAT-56819]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTCTAGAAACCAACCAACTAGTGAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCCATTCGGGCTGGATTGCACGGTGCAATTAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACCGATCACGAGCTGTTAACAGAGCGAGAGTGTTTGATC
CTCAGAGAAGTGGAAAAAGGATACACGAACCAAGAGATTGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
CTTGACGTCCATCTTTAATAAGCTGAATGTTGGCTCTCGAACCGAAGCGGTGTTAATTGCAAAATCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718

Multiple sequence alignment