Detailed information NTG1092554

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACLSSQ_RS03915
• Genome accession: NZ_CP179682
• Coordinates: 773893..775266 (+)
• Length: 457 a.a.
• NCBI ID: WP_416243835.1
• Uniprot ID: -
• Organism: Azospira sp. APE16
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 768893..780266

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLSSQ_RS03895 (ACLSSQ_03895)	-	769894..770226 (+)	333	WP_014235264.1	hypothetical protein	-
ACLSSQ_RS03900 (ACLSSQ_03900)	-	770698..771774 (-)	1077	WP_014235263.1	integrase	-
ACLSSQ_RS03905 (ACLSSQ_03905)	-	772065..772289 (+)	225	WP_130459156.1	PP0621 family protein	-
ACLSSQ_RS03910 (ACLSSQ_03910)	-	772299..773912 (+)	1614	WP_416243834.1	two-component system sensor histidine kinase NtrB	-
ACLSSQ_RS03915 (ACLSSQ_03915)	pilR	773893..775266 (+)	1374	WP_416243835.1	sigma-54-dependent transcriptional regulator	Regulator
ACLSSQ_RS03920 (ACLSSQ_03920)	ampD	775266..775838 (+)	573	WP_014235259.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
ACLSSQ_RS03925 (ACLSSQ_03925)	-	776310..777380 (+)	1071	WP_416243836.1	hypothetical protein	-
ACLSSQ_RS03930 (ACLSSQ_03930)	-	777526..778683 (-)	1158	WP_416243837.1	pyridoxal phosphate-dependent aminotransferase	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49489.25 Da
• Isoelectric Point: 4.8317

>NTDB_id=1092554 ACLSSQ_RS03915 WP_416243835.1 773893..775266(+) (pilR) [Azospira sp. APE16]
MAQAKSERRARGALARVLVVDDEADIRELVDLTLSRMGLAADCAGTVAEAREFLARESYQLCLTDMRLPDGEGLELVRLI
GEQYSETPVAVITAFGSAENAVAALKAGAFDYLAKPVALDQLRTLIKSAIDLPVASAAEGAPRSEALQLLGDSRAMSTVR
EIIAKLARSQAPVYISGESGCGKELAARLIHEQSNRSQAPFVPVNCGAIPENLMESEFFGYRKGAFTGAEQDREGFFQAA
GGGTLFLDEVADLPLSMQVKLLRAIQEKRVRKVGATVEEAVDVRLICATHQDLKASVEAGTFRQDLYYRLNVIELRMPPL
RERAEDIPQLARACLGRLAHQASALPLTSAAEAALCRYTFPGNVRELENILERATALCSGSEIDEGDLQLSPADDGHPDA
GSEGRGGESLDTYLDRLERQAIQEAVVQTQGNRTAAARLLGITFRSLRYRMARLGIE

Nucleotide

• Length: 1374 bp

>NTDB_id=1092554 ACLSSQ_RS03915 WP_416243835.1 773893..775266(+) (pilR) [Azospira sp. APE16]
ATGGCTCAGGCCAAAAGTGAACGCCGCGCCAGGGGGGCGCTGGCCCGGGTGTTGGTGGTGGATGACGAAGCGGATATCCG
GGAACTGGTGGACCTCACCCTGTCGCGCATGGGGCTGGCGGCGGATTGCGCCGGCACCGTGGCCGAGGCTCGGGAGTTCC
TTGCCCGGGAGTCTTACCAGCTGTGCCTGACCGACATGCGTTTGCCCGATGGGGAAGGGCTGGAACTGGTGCGCCTCATC
GGCGAGCAGTACAGCGAGACGCCGGTGGCCGTGATCACCGCCTTCGGCAGTGCCGAGAACGCGGTGGCGGCCCTCAAGGC
CGGGGCCTTCGACTATCTGGCCAAGCCGGTGGCCCTGGATCAGCTGCGTACCCTGATCAAGTCGGCCATCGATCTGCCGG
TGGCATCCGCGGCCGAGGGGGCGCCCCGCAGCGAGGCCCTGCAGCTGCTCGGCGATTCCCGGGCCATGAGCACGGTGCGG
GAGATCATCGCCAAGCTGGCCCGCAGCCAGGCGCCGGTTTACATCTCCGGCGAATCCGGCTGCGGCAAGGAACTGGCGGC
CCGCCTCATCCACGAGCAGAGCAACCGCAGCCAGGCGCCTTTCGTTCCGGTGAACTGCGGGGCCATCCCCGAGAACCTCA
TGGAAAGCGAGTTCTTCGGTTATCGCAAGGGCGCCTTCACCGGTGCCGAGCAGGATCGGGAAGGATTCTTCCAGGCGGCG
GGGGGCGGCACCCTGTTTCTCGACGAGGTGGCCGACCTGCCCCTGTCCATGCAGGTCAAGCTGCTGCGGGCCATCCAGGA
AAAGCGGGTGCGCAAGGTGGGCGCCACCGTGGAGGAGGCGGTGGATGTGCGCCTCATCTGTGCCACCCACCAGGACCTGA
AGGCCTCCGTCGAGGCCGGCACCTTCCGCCAGGATTTGTACTACCGTCTCAACGTCATCGAGTTGCGCATGCCGCCGCTG
CGGGAGCGGGCCGAGGACATTCCCCAGCTGGCTCGTGCCTGTCTCGGCCGTCTGGCCCATCAGGCGTCGGCGTTGCCGCT
GACGTCCGCGGCCGAAGCGGCGCTGTGTCGCTACACCTTCCCCGGCAACGTCCGCGAACTGGAGAATATTCTGGAGCGGG
CCACGGCGCTATGCAGTGGCAGCGAGATCGACGAAGGCGACCTGCAGCTTTCCCCTGCCGATGACGGTCATCCCGATGCC
GGTTCCGAAGGGCGCGGCGGCGAGTCTCTCGATACCTATCTGGACCGTCTGGAACGCCAGGCGATTCAGGAGGCGGTGGT
TCAGACCCAGGGCAATCGCACGGCGGCGGCACGCCTGCTCGGCATCACCTTCCGCTCCCTGCGCTATCGCATGGCCCGTC
TGGGGATCGAGTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-453)

• Sigma-54 interaction domain (Sigma54_activat) (150-315)

• Response regulator receiver domain (Response_reg) (17-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	60.802	98.249	0.597
pilR	Acinetobacter baumannii strain A118	46.32	100	0.468
luxO	Vibrio cholerae strain A1552	38.095	96.499	0.368