Detailed information NTG1092445

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACKW6E_RS13260
• Genome accession: NZ_CP178915
• Coordinates: 2910351..2911214 (+)
• Length: 287 a.a.
• NCBI ID: WP_413975143.1
• Uniprot ID: -
• Organism: Stenotrophomonas acidaminiphila strain ZCMU-Sa01
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2905351..2916214

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKW6E_RS13235 (ACKW6E_13235)	-	2906039..2906737 (+)	699	WP_413975138.1	hypothetical protein	-
ACKW6E_RS13240 (ACKW6E_13240)	galE	2906759..2907733 (-)	975	WP_413975139.1	UDP-glucose 4-epimerase GalE	-
ACKW6E_RS13245 (ACKW6E_13245)	-	2907874..2908239 (-)	366	WP_413975140.1	pilin	-
ACKW6E_RS13250 (ACKW6E_13250)	-	2908348..2908704 (-)	357	WP_413975141.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
ACKW6E_RS13255 (ACKW6E_13255)	pilC	2909084..2910343 (+)	1260	WP_413975142.1	type II secretion system F family protein	Machinery gene
ACKW6E_RS13260 (ACKW6E_13260)	pilD	2910351..2911214 (+)	864	WP_413975143.1	prepilin peptidase	Machinery gene
ACKW6E_RS13265 (ACKW6E_13265)	coaE	2911261..2911884 (+)	624	WP_182212757.1	dephospho-CoA kinase	-
ACKW6E_RS13270 (ACKW6E_13270)	-	2911915..2913252 (-)	1338	WP_413975144.1	sensor histidine kinase	-
ACKW6E_RS13275 (ACKW6E_13275)	-	2913245..2913922 (-)	678	WP_056931224.1	response regulator transcription factor	-
ACKW6E_RS13280 (ACKW6E_13280)	-	2914052..2914516 (-)	465	WP_192301407.1	hypothetical protein	-
ACKW6E_RS13285 (ACKW6E_13285)	rimK	2914700..2915575 (-)	876	WP_056931223.1	30S ribosomal protein S6--L-glutamate ligase	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 31890.85 Da
• Isoelectric Point: 8.4746

>NTDB_id=1092445 ACKW6E_RS13260 WP_413975143.1 2910351..2911214(+) (pilD) [Stenotrophomonas acidaminiphila strain ZCMU-Sa01]
MAFFDQHPGIGYPAAAGLGLLIGSFLNVVILRLPRRMEWQWKRDAREILGEPDIYEPPPPGVVVEPSHCPHCKHKLSWYE
NIPLFSWLLQRGRCRHCQAPISIQYPLVELLTAVLVLASVWQFGFGWQGFGAIVLTCFLIALSGIDLRTQLLPDQLTLPL
MWLGLIGSMDNLYMPTKPALIGAAVGYLSLWTVWWLFKQITGKEGMGHGDFKLLAALGAWCGLKGILPIILLSSLVGAIV
GSVWLYARGRDRATPIPFGPYLAIAGWLVFMWGDPMIAAYRQWAGLA

Nucleotide

• Length: 864 bp

>NTDB_id=1092445 ACKW6E_RS13260 WP_413975143.1 2910351..2911214(+) (pilD) [Stenotrophomonas acidaminiphila strain ZCMU-Sa01]
ATGGCATTTTTCGACCAGCATCCCGGCATCGGCTACCCGGCCGCTGCCGGATTGGGGTTGCTGATCGGCAGCTTCCTCAA
CGTGGTCATCCTGCGCCTGCCCCGGCGCATGGAGTGGCAATGGAAGCGCGATGCGCGCGAGATCCTCGGTGAGCCGGACA
TCTACGAGCCGCCCCCGCCGGGCGTGGTGGTGGAGCCGTCGCATTGCCCGCACTGCAAGCACAAGCTGAGCTGGTACGAG
AACATCCCGCTGTTCAGCTGGCTGCTGCAGCGGGGACGCTGCCGCCATTGCCAGGCGCCGATCTCCATCCAGTACCCGCT
GGTTGAACTGCTGACCGCCGTACTGGTGCTGGCCAGCGTGTGGCAGTTCGGCTTCGGCTGGCAGGGCTTCGGTGCGATCG
TCCTGACCTGCTTCCTGATCGCGCTGTCCGGCATCGACCTGCGCACCCAGCTGCTGCCCGACCAGCTGACCCTGCCGCTG
ATGTGGCTGGGACTGATCGGCAGCATGGACAACCTGTACATGCCCACCAAACCTGCACTGATCGGTGCCGCGGTGGGCTA
CCTGTCGCTATGGACCGTGTGGTGGCTGTTCAAGCAGATCACCGGCAAGGAAGGCATGGGCCACGGCGATTTCAAGCTGC
TGGCGGCGCTGGGCGCCTGGTGCGGACTGAAGGGCATCCTGCCGATCATCCTGCTGTCCTCGCTGGTGGGCGCCATCGTC
GGCTCGGTCTGGCTGTACGCACGCGGACGCGACCGCGCCACGCCCATCCCGTTCGGCCCCTACCTGGCCATCGCCGGCTG
GCTGGTCTTCATGTGGGGTGACCCGATGATCGCCGCTTACCGGCAGTGGGCCGGCCTGGCGTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (133-241)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	50.178	97.909	0.491
pilD	Acinetobacter baumannii D1279779	49.466	97.909	0.484
pilD	Vibrio cholerae strain A1552	47.569	100	0.477
pilD	Vibrio campbellii strain DS40M4	48.057	98.606	0.474
pilD	Neisseria gonorrhoeae MS11	47.059	94.774	0.446