Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACL9SD_RS17080 Genome accession   NZ_CP178914
Coordinates   3378989..3379627 (-) Length   212 a.a.
NCBI ID   WP_413944957.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain IFST-745     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3373989..3384627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL9SD_RS17045 (ACL9SD_17045) - 3375179..3375610 (+) 432 WP_003184834.1 Na(+)/H(+) antiporter subunit B -
  ACL9SD_RS17050 (ACL9SD_17050) - 3375610..3375951 (+) 342 WP_020452785.1 Na(+)/H(+) antiporter subunit C -
  ACL9SD_RS17055 (ACL9SD_17055) - 3375944..3377422 (+) 1479 WP_026580052.1 Na+/H+ antiporter subunit D -
  ACL9SD_RS17060 (ACL9SD_17060) - 3377428..3377904 (+) 477 WP_020452787.1 Na+/H+ antiporter subunit E -
  ACL9SD_RS17065 (ACL9SD_17065) - 3377904..3378188 (+) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  ACL9SD_RS17070 (ACL9SD_17070) mnhG 3378172..3378546 (+) 375 WP_023856153.1 monovalent cation/H(+) antiporter subunit G -
  ACL9SD_RS17075 (ACL9SD_17075) - 3378583..3378972 (-) 390 WP_009329508.1 hotdog fold thioesterase -
  ACL9SD_RS17080 (ACL9SD_17080) comA 3378989..3379627 (-) 639 WP_413944957.1 response regulator transcription factor Regulator
  ACL9SD_RS17085 (ACL9SD_17085) comP 3379714..3382026 (-) 2313 WP_095323674.1 ATP-binding protein Regulator
  ACL9SD_RS17090 (ACL9SD_17090) comX 3382038..3382211 (-) 174 WP_080131484.1 competence pheromone ComX -
  ACL9SD_RS17095 (ACL9SD_17095) - 3382215..3383096 (-) 882 WP_080131485.1 polyprenyl synthetase family protein -
  ACL9SD_RS17100 (ACL9SD_17100) degQ 3383283..3383423 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  ACL9SD_RS17105 (ACL9SD_17105) - 3384035..3384256 (+) 222 WP_229029875.1 hypothetical protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24158.59 Da        Isoelectric Point: 4.7105

>NTDB_id=1092408 ACL9SD_RS17080 WP_413944957.1 3378989..3379627(-) (comA) [Bacillus paralicheniformis strain IFST-745]
MRRLLVIDDHPAVMEGTKAILETNQDFVVDCLSPEASEQFLKKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDYDYFKQLITQQKSKSNSQQTQHDLLTERECLIL
KEVEKGYINQEIADALHLSKRSIEYSLTSVFSKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=1092408 ACL9SD_RS17080 WP_413944957.1 3378989..3379627(-) (comA) [Bacillus paralicheniformis strain IFST-745]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACGAAGGCAATTCTTGAAACGAACCAGGACTT
TGTTGTCGATTGCCTCAGCCCTGAAGCCAGCGAACAATTTCTCAAGAAGCATGATTTTTCTGCGTATGACCTGATCTTAA
TGGATTTAAATTTGGGTGAAATCAACGGCATGGACCTATCTAAGAAAATCCTTGAGACGTGTTCATCATGCAAAATTATC
GTTTACACAGGCTATGAAGTCGAAGATTATTTTGAAGAGGCGATTCGTTCCGGCATGCACGGCGCCATCAGCAAAACGGA
ATCGAAGGAAAAGATTATAGAGTACATATATCAGGTACTGGATAATAAAATTGTCGTCGATTATGATTATTTCAAGCAGC
TGATAACACAGCAAAAATCGAAGTCAAACAGCCAGCAGACCCAGCACGATCTTTTGACTGAAAGGGAATGCCTGATCTTA
AAAGAAGTCGAAAAAGGCTATATAAATCAGGAAATCGCTGATGCGCTTCATTTAAGCAAGCGGTCGATCGAATACAGTCT
GACTTCCGTATTCAGCAAACTGAATGTAGGATCACGGACAGAGGCTGTTTTAATCGCGAAATCTGAAGGCGTACTTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

76.636

100

0.774

Multiple sequence alignment