Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACL6EO_RS17180 Genome accession   NZ_CP178718
Coordinates   3498024..3498713 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain SY1154     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3493024..3503713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6EO_RS17145 (ACL6EO_17145) - 3493222..3493704 (-) 483 WP_031379255.1 flagellar protein FlgN -
  ACL6EO_RS17150 (ACL6EO_17150) flgM 3493719..3493985 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACL6EO_RS17155 (ACL6EO_17155) - 3494055..3494474 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  ACL6EO_RS17160 (ACL6EO_17160) comFC 3494548..3495237 (-) 690 WP_276351066.1 ComF family protein Machinery gene
  ACL6EO_RS17165 (ACL6EO_17165) - 3495243..3495527 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACL6EO_RS17170 (ACL6EO_17170) comFA 3495585..3496970 (-) 1386 WP_413384270.1 DEAD/DEAH box helicase Machinery gene
  ACL6EO_RS17175 (ACL6EO_17175) - 3497078..3497926 (-) 849 WP_003151387.1 DegV family protein -
  ACL6EO_RS17180 (ACL6EO_17180) degU 3498024..3498713 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACL6EO_RS17185 (ACL6EO_17185) degS 3498790..3499953 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  ACL6EO_RS17190 (ACL6EO_17190) - 3500176..3500823 (+) 648 WP_007614107.1 YigZ family protein -
  ACL6EO_RS17195 (ACL6EO_17195) - 3500828..3502042 (+) 1215 WP_014419013.1 LCP family protein -
  ACL6EO_RS17200 (ACL6EO_17200) - 3502132..3503208 (-) 1077 WP_276350986.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1090953 ACL6EO_RS17180 WP_003219701.1 3498024..3498713(-) (degU) [Bacillus velezensis strain SY1154]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1090953 ACL6EO_RS17180 WP_003219701.1 3498024..3498713(-) (degU) [Bacillus velezensis strain SY1154]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment