Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACL6EO_RS17160 Genome accession   NZ_CP178718
Coordinates   3494548..3495237 (-) Length   229 a.a.
NCBI ID   WP_276351066.1    Uniprot ID   A0AAP3YDA3
Organism   Bacillus velezensis strain SY1154     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3489548..3500237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6EO_RS17125 (ACL6EO_17125) fliW 3489639..3490070 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  ACL6EO_RS17130 (ACL6EO_17130) - 3490100..3490669 (-) 570 WP_017418818.1 DUF6470 family protein -
  ACL6EO_RS17135 (ACL6EO_17135) flgL 3490760..3491677 (-) 918 WP_014419007.1 flagellar hook-associated protein FlgL -
  ACL6EO_RS17140 (ACL6EO_17140) flgK 3491689..3493206 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  ACL6EO_RS17145 (ACL6EO_17145) - 3493222..3493704 (-) 483 WP_031379255.1 flagellar protein FlgN -
  ACL6EO_RS17150 (ACL6EO_17150) flgM 3493719..3493985 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACL6EO_RS17155 (ACL6EO_17155) - 3494055..3494474 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  ACL6EO_RS17160 (ACL6EO_17160) comFC 3494548..3495237 (-) 690 WP_276351066.1 ComF family protein Machinery gene
  ACL6EO_RS17165 (ACL6EO_17165) - 3495243..3495527 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACL6EO_RS17170 (ACL6EO_17170) comFA 3495585..3496970 (-) 1386 WP_413384270.1 DEAD/DEAH box helicase Machinery gene
  ACL6EO_RS17175 (ACL6EO_17175) - 3497078..3497926 (-) 849 WP_003151387.1 DegV family protein -
  ACL6EO_RS17180 (ACL6EO_17180) degU 3498024..3498713 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACL6EO_RS17185 (ACL6EO_17185) degS 3498790..3499953 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25187.75 Da        Isoelectric Point: 8.0779

>NTDB_id=1090951 ACL6EO_RS17160 WP_276351066.1 3494548..3495237(-) (comFC) [Bacillus velezensis strain SY1154]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSACSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1090951 ACL6EO_RS17160 WP_276351066.1 3494548..3495237(-) (comFC) [Bacillus velezensis strain SY1154]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCGCATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(166-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603

Multiple sequence alignment