Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACL6EO_RS17170 Genome accession   NZ_CP178718
Coordinates   3495585..3496970 (-) Length   461 a.a.
NCBI ID   WP_413384270.1    Uniprot ID   -
Organism   Bacillus velezensis strain SY1154     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3490585..3501970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6EO_RS17135 (ACL6EO_17135) flgL 3490760..3491677 (-) 918 WP_014419007.1 flagellar hook-associated protein FlgL -
  ACL6EO_RS17140 (ACL6EO_17140) flgK 3491689..3493206 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  ACL6EO_RS17145 (ACL6EO_17145) - 3493222..3493704 (-) 483 WP_031379255.1 flagellar protein FlgN -
  ACL6EO_RS17150 (ACL6EO_17150) flgM 3493719..3493985 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACL6EO_RS17155 (ACL6EO_17155) - 3494055..3494474 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  ACL6EO_RS17160 (ACL6EO_17160) comFC 3494548..3495237 (-) 690 WP_276351066.1 ComF family protein Machinery gene
  ACL6EO_RS17165 (ACL6EO_17165) - 3495243..3495527 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACL6EO_RS17170 (ACL6EO_17170) comFA 3495585..3496970 (-) 1386 WP_413384270.1 DEAD/DEAH box helicase Machinery gene
  ACL6EO_RS17175 (ACL6EO_17175) - 3497078..3497926 (-) 849 WP_003151387.1 DegV family protein -
  ACL6EO_RS17180 (ACL6EO_17180) degU 3498024..3498713 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACL6EO_RS17185 (ACL6EO_17185) degS 3498790..3499953 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  ACL6EO_RS17190 (ACL6EO_17190) - 3500176..3500823 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52720.13 Da        Isoelectric Point: 10.2365

>NTDB_id=1090952 ACL6EO_RS17170 WP_413384270.1 3495585..3496970(-) (comFA) [Bacillus velezensis strain SY1154]
MSEGDSEFSEVRDFFYGRRLLRSEIPFSDQRIKRLTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLNKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCDNWKKKLQKGKLPRSVTDWV
RQKLQLQLPVFLFVPSVHVLKKTTDYFRKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1090952 ACL6EO_RS17170 WP_413384270.1 3495585..3496970(-) (comFA) [Bacillus velezensis strain SY1154]
ATGTCCGAAGGTGATTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCGTTTATTGAGATCTGAGATACCGTT
TTCAGACCAGCGCATCAAGCGTTTAACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTTTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTTTGTGTCGCAACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAATAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCGACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGACAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATTACAGCTGCCGGTTTTCTTATTCGTCCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCGGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(330-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

61.957

99.783

0.618

Multiple sequence alignment