Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGA   Type   Machinery gene
Locus tag   ACL6ER_RS11695 Genome accession   NZ_CP178717
Coordinates   2382322..2383392 (-) Length   356 a.a.
NCBI ID   WP_225514212.1    Uniprot ID   A0A9Q4HUQ4
Organism   Bacillus inaquosorum strain SY1167     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2377322..2388392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6ER_RS11650 (ACL6ER_11650) tapA 2377797..2378561 (-) 765 WP_060399014.1 amyloid fiber anchoring/assembly protein TapA -
  ACL6ER_RS11655 (ACL6ER_11655) - 2378834..2379160 (+) 327 WP_029316858.1 YqzG/YhdC family protein -
  ACL6ER_RS11660 (ACL6ER_11660) - 2379202..2379381 (-) 180 WP_003236949.1 YqzE family protein -
  ACL6ER_RS11665 (ACL6ER_11665) comGG 2379452..2379826 (-) 375 WP_060399015.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACL6ER_RS11670 (ACL6ER_11670) comGF 2379827..2380210 (-) 384 WP_413324720.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACL6ER_RS11675 (ACL6ER_11675) comGE 2380236..2380583 (-) 348 WP_225514215.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACL6ER_RS11680 (ACL6ER_11680) comGD 2380567..2380998 (-) 432 WP_268276766.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACL6ER_RS11685 (ACL6ER_11685) comGC 2380988..2381284 (-) 297 WP_019258890.1 comG operon protein ComGC Machinery gene
  ACL6ER_RS11690 (ACL6ER_11690) comGB 2381298..2382335 (-) 1038 WP_225514213.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACL6ER_RS11695 (ACL6ER_11695) comGA 2382322..2383392 (-) 1071 WP_225514212.1 competence protein ComGA Machinery gene
  ACL6ER_RS11700 (ACL6ER_11700) - 2383608..2384018 (-) 411 WP_268332592.1 CBS domain-containing protein -
  ACL6ER_RS11705 (ACL6ER_11705) corA 2384081..2385025 (-) 945 WP_268291811.1 magnesium transporter CorA -
  ACL6ER_RS11710 (ACL6ER_11710) - 2385169..2386497 (+) 1329 WP_268332593.1 hemolysin family protein -
  ACL6ER_RS11715 (ACL6ER_11715) - 2386556..2387395 (-) 840 WP_268290045.1 STAS domain-containing protein -
  ACL6ER_RS11725 (ACL6ER_11725) mgsR 2387620..2387997 (-) 378 WP_003236975.1 transcriptional regulator MgsR -

Sequence


Protein


Download         Length: 356 a.a.        Molecular weight: 40471.60 Da        Isoelectric Point: 8.8451

>NTDB_id=1090854 ACL6ER_RS11695 WP_225514212.1 2382322..2383392(-) (comGA) [Bacillus inaquosorum strain SY1167]
MDSIEKISRTLIEEAYITKASDIHIVPRERDAIIHFRVDHALLKKRNMKKEDCVRLISHFKFLSAMDIGERRKPQNGSLT
LKLEEGHVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSTGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIQQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRSTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHETD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1090854 ACL6ER_RS11695 WP_225514212.1 2382322..2383392(-) (comGA) [Bacillus inaquosorum strain SY1167]
TTGGATTCAATAGAAAAGATAAGCAGAACCTTGATTGAAGAGGCATATATAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGTGATGCCATCATTCATTTTCGGGTTGATCATGCATTGTTGAAAAAAAGGAACATGAAAAAAGAAGACTGTG
TAAGACTGATTTCACATTTTAAATTTCTCTCAGCGATGGACATAGGGGAAAGACGAAAGCCGCAAAATGGTTCGCTTACG
TTAAAGCTTGAAGAGGGACATGTTCATTTAAGAATGTCAACGCTCCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCTCAATACAATATCCCTTCGATTGATAAACTGTCATTATTTCCGAAGACAGGGGCCACCTTGCTCTCATTTTTAA
AACATTCCCACGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACCACTACATTATACTCTCTTGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACACTGGAGGACCCTGTTGAAACAAGGGACGAGGATGTTCTTCAGGTACA
GGTGAATGAAAAAGCGGGTGTGACATATTCCACAGGGCTGAAGGCTATTTTGCGCCATGACCCGGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCCGAAATTGCGGTGCGGGCAGCGATGACGGGGCATTTGGTGCTGACGAGCCTTCAC
ACGAGAGATGCGAAGGGCGCGATTTACAGGCTGCTTGAATTCGGCATCAATATGAATGAAATCCAACAGACCGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCGGTGTATTGCCGCCAGTCAC
GAAGCACCAGGAGAGCAAGCGTTTATGAGCTTCTTTACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAGTATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTTGGCTACTTGACGACAAACAATTA
TGACCGGTGGGTTTATCATGAAACAGATTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.966


Multiple sequence alignment