Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACL6ER_RS07750 Genome accession   NZ_CP178717
Coordinates   1554879..1555772 (+) Length   297 a.a.
NCBI ID   WP_268279068.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain SY1167     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1549879..1560772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6ER_RS07730 (ACL6ER_07730) - 1550548..1552278 (+) 1731 WP_268331494.1 hypothetical protein -
  ACL6ER_RS07735 (ACL6ER_07735) - 1552275..1552556 (+) 282 WP_268274883.1 FlhB-like flagellar biosynthesis protein -
  ACL6ER_RS07740 (ACL6ER_07740) sucC 1552730..1553887 (+) 1158 WP_003238568.1 ADP-forming succinate--CoA ligase subunit beta -
  ACL6ER_RS07745 (ACL6ER_07745) sucD 1553916..1554818 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  ACL6ER_RS07750 (ACL6ER_07750) dprA 1554879..1555772 (+) 894 WP_268279068.1 DNA-processing protein DprA Machinery gene
  ACL6ER_RS07755 (ACL6ER_07755) topA 1555957..1558032 (+) 2076 WP_225515051.1 type I DNA topoisomerase -
  ACL6ER_RS07760 (ACL6ER_07760) trmFO 1558108..1559415 (+) 1308 WP_225515049.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACL6ER_RS07765 (ACL6ER_07765) xerC 1559483..1560397 (+) 915 WP_003238557.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32953.36 Da        Isoelectric Point: 9.8035

>NTDB_id=1090838 ACL6ER_RS07750 WP_268279068.1 1554879..1555772(+) (dprA) [Bacillus inaquosorum strain SY1167]
MDQAAACLMICRINQLLSPSLLLKWWKADPSMSLTSPVFETVTRGKVKAATLKNKIEEYYPKLQRVLAAYHEQGINIIPI
SSKQYPFWLKTIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGIQVVNHLTKELCRKDWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPATKPQKWHFPMRNRIISGLSEGIIVVQGKEKSGSLITA
DQAMEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=1090838 ACL6ER_RS07750 WP_268279068.1 1554879..1555772(+) (dprA) [Bacillus inaquosorum strain SY1167]
TTGGATCAGGCCGCTGCCTGTTTAATGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCTGATCCGTCTATGTCGCTGACATCGCCCGTGTTCGAAACTGTTACTCGCGGTAAAGTAAAGGCAGCTACATTAAAAA
ACAAAATAGAAGAATATTACCCAAAACTTCAGCGTGTACTTGCTGCTTACCATGAGCAAGGCATTAACATCATCCCGATT
TCTTCAAAGCAATATCCTTTCTGGCTGAAAACCATTTATGATCCCCCCGCTGTCCTGTTTGCAAAGGGTGATATGACCCT
TCTTTCTAAAGGGAGGAAAATTGGAATTGTAGGTACAAGAAATCCAACAGCGTATGGTATACAAGTTGTCAATCATCTTA
CAAAAGAGCTTTGCCGTAAAGATTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATCGGCGTCATTGCAGGCGGATTTCAGCACATTTATCCCCGGGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTTCTGTCAGAGCATCCACCAGCAACCAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATCATCAGCGGATTAAGTGAAGGCATTATTGTCGTGCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCA
GATCAAGCAATGGAACAAGGGAGAGAAGTTTTTGCCGTACCCGGTTCATTATTTGATCCTTACGCCGGAGGTCCTATAAA
ACTAATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAGCTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

92.593

100

0.926
  dprA Legionella pneumophila strain ERS1305867

37.919

100

0.38
  dprA Lactococcus lactis subsp. cremoris KW2

41.729

89.562

0.374

Multiple sequence alignment