Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   ACL6EQ_RS11865 Genome accession   NZ_CP178716
Coordinates   2308746..2309816 (-) Length   356 a.a.
NCBI ID   WP_085186492.1    Uniprot ID   -
Organism   Bacillus subtilis strain SY1483     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2303746..2314816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6EQ_RS11820 (ACL6EQ_11820) tapA 2304224..2304985 (-) 762 WP_024573387.1 amyloid fiber anchoring/assembly protein TapA -
  ACL6EQ_RS11825 (ACL6EQ_11825) yqzG 2305258..2305584 (+) 327 WP_413358461.1 YqzG/YhdC family protein -
  ACL6EQ_RS11830 (ACL6EQ_11830) spoIITA 2305626..2305805 (-) 180 WP_003230176.1 YqzE family protein -
  ACL6EQ_RS11835 (ACL6EQ_11835) comGG 2305876..2306250 (-) 375 WP_144500712.1 ComG operon protein ComGG Machinery gene
  ACL6EQ_RS11840 (ACL6EQ_11840) comGF 2306251..2306634 (-) 384 WP_185183735.1 ComG operon protein ComGF Machinery gene
  ACL6EQ_RS11845 (ACL6EQ_11845) comGE 2306660..2307007 (-) 348 WP_185183734.1 ComG operon protein 5 Machinery gene
  ACL6EQ_RS11850 (ACL6EQ_11850) comGD 2306991..2307422 (-) 432 WP_024573390.1 comG operon protein ComGD Machinery gene
  ACL6EQ_RS11855 (ACL6EQ_11855) comGC 2307412..2307708 (-) 297 WP_185183733.1 comG operon protein ComGC Machinery gene
  ACL6EQ_RS11860 (ACL6EQ_11860) comGB 2307722..2308759 (-) 1038 WP_185183732.1 comG operon protein ComGB Machinery gene
  ACL6EQ_RS11865 (ACL6EQ_11865) comGA 2308746..2309816 (-) 1071 WP_085186492.1 competence protein ComGA Machinery gene
  ACL6EQ_RS11870 (ACL6EQ_11870) - 2310078..2310227 (-) 150 WP_250622588.1 hypothetical protein -
  ACL6EQ_RS11875 (ACL6EQ_11875) corA 2310229..2311182 (-) 954 WP_032677123.1 magnesium transporter CorA -
  ACL6EQ_RS11880 (ACL6EQ_11880) yqhB 2311325..2312653 (+) 1329 WP_003230150.1 hemolysin family protein -
  ACL6EQ_RS11885 (ACL6EQ_11885) rsbRD 2312706..2313542 (-) 837 WP_413358472.1 RsbT co-antagonist protein RsbRD -
  ACL6EQ_RS11895 (ACL6EQ_11895) mgsR 2313766..2314146 (-) 381 WP_003230147.1 transcriptional regulator MgsR -
  ACL6EQ_RS11900 (ACL6EQ_11900) yqgY 2314378..2314623 (+) 246 WP_003226300.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40488.67 Da        Isoelectric Point: 9.0175

>NTDB_id=1090776 ACL6EQ_RS11865 WP_085186492.1 2308746..2309816(-) (comGA) [Bacillus subtilis strain SY1483]
MDSIEKLSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSTGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHDKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1090776 ACL6EQ_RS11865 WP_085186492.1 2308746..2309816(-) (comGA) [Bacillus subtilis strain SY1483]
TTGGATTCAATAGAAAAGTTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATCGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGGCTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACACTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCCAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACTACCACATTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCACAGGTCTGAAAGCAATTTTGCGCCATGATCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTGACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGCCAGTCAC
GAAATACCAGGAGAGCTAGTGTTTATGAGCTTCTATACGGGAAAAATCTTCAGCAATGTATTCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGATAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

99.157

100

0.992
  pilB Glaesserella parasuis strain SC1401

43.878

82.584

0.362

Multiple sequence alignment