Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACL6EQ_RS11805 Genome accession   NZ_CP178716
Coordinates   2302391..2302726 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain SY1483     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2297391..2307726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6EQ_RS11785 (ACL6EQ_11785) gcvT 2297983..2299071 (-) 1089 WP_413358456.1 glycine cleavage system aminomethyltransferase GcvT -
  ACL6EQ_RS11790 (ACL6EQ_11790) hepAA 2299513..2301186 (+) 1674 WP_004398544.1 DEAD/DEAH box helicase -
  ACL6EQ_RS11795 (ACL6EQ_11795) yqhG 2301207..2302001 (+) 795 WP_003230200.1 YqhG family protein -
  ACL6EQ_RS11800 (ACL6EQ_11800) sinI 2302184..2302357 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  ACL6EQ_RS11805 (ACL6EQ_11805) sinR 2302391..2302726 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  ACL6EQ_RS11810 (ACL6EQ_11810) tasA 2302819..2303604 (-) 786 WP_326382994.1 biofilm matrix protein TasA -
  ACL6EQ_RS11815 (ACL6EQ_11815) sipW 2303668..2304240 (-) 573 WP_003246088.1 signal peptidase I SipW -
  ACL6EQ_RS11820 (ACL6EQ_11820) tapA 2304224..2304985 (-) 762 WP_024573387.1 amyloid fiber anchoring/assembly protein TapA -
  ACL6EQ_RS11825 (ACL6EQ_11825) yqzG 2305258..2305584 (+) 327 WP_413358461.1 YqzG/YhdC family protein -
  ACL6EQ_RS11830 (ACL6EQ_11830) spoIITA 2305626..2305805 (-) 180 WP_003230176.1 YqzE family protein -
  ACL6EQ_RS11835 (ACL6EQ_11835) comGG 2305876..2306250 (-) 375 WP_144500712.1 ComG operon protein ComGG Machinery gene
  ACL6EQ_RS11840 (ACL6EQ_11840) comGF 2306251..2306634 (-) 384 WP_185183735.1 ComG operon protein ComGF Machinery gene
  ACL6EQ_RS11845 (ACL6EQ_11845) comGE 2306660..2307007 (-) 348 WP_185183734.1 ComG operon protein 5 Machinery gene
  ACL6EQ_RS11850 (ACL6EQ_11850) comGD 2306991..2307422 (-) 432 WP_024573390.1 comG operon protein ComGD Machinery gene
  ACL6EQ_RS11855 (ACL6EQ_11855) comGC 2307412..2307708 (-) 297 WP_185183733.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1090769 ACL6EQ_RS11805 WP_003226345.1 2302391..2302726(+) (sinR) [Bacillus subtilis strain SY1483]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1090769 ACL6EQ_RS11805 WP_003226345.1 2302391..2302726(+) (sinR) [Bacillus subtilis strain SY1483]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
TCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment