Detailed information NTG1090698

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACLKML_RS14370
• Genome accession: NZ_CP178628
• Coordinates: 1472554..1473441 (-)
• Length: 295 a.a.
• NCBI ID: WP_413283768.1
• Uniprot ID: -
• Organism: Vibrio sp. MA40-2
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1467554..1478441

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLKML_RS14335 (ACLKML_14335)	rpsP	1468802..1469050 (+)	249	WP_317716906.1	30S ribosomal protein S16	-
ACLKML_RS14340 (ACLKML_14340)	rimM	1469070..1469624 (+)	555	WP_413283762.1	ribosome maturation factor RimM	-
ACLKML_RS14345 (ACLKML_14345)	trmD	1469649..1470389 (+)	741	WP_413283763.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
ACLKML_RS14350 (ACLKML_14350)	rplS	1470445..1470798 (+)	354	WP_413283764.1	50S ribosomal protein L19	-
ACLKML_RS14355 (ACLKML_14355)	yacG	1470899..1471093 (-)	195	WP_413283765.1	DNA gyrase inhibitor YacG	-
ACLKML_RS14360 (ACLKML_14360)	zapD	1471166..1471906 (-)	741	WP_413283766.1	cell division protein ZapD	-
ACLKML_RS14365 (ACLKML_14365)	coaE	1471946..1472551 (-)	606	WP_413283767.1	dephospho-CoA kinase	-
ACLKML_RS14370 (ACLKML_14370)	pilD	1472554..1473441 (-)	888	WP_413283768.1	prepilin peptidase	Machinery gene
ACLKML_RS14375 (ACLKML_14375)	-	1473475..1474695 (-)	1221	WP_413283769.1	type II secretion system F family protein	-
ACLKML_RS14380 (ACLKML_14380)	pilB	1474770..1476017 (-)	1248	WP_413283770.1	GspE/PulE family protein	Machinery gene
ACLKML_RS14385 (ACLKML_14385)	-	1476091..1476543 (-)	453	WP_413283771.1	pilin	-
ACLKML_RS14390 (ACLKML_14390)	nadC	1476862..1477749 (-)	888	WP_413283772.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 295 a.a.
• Molecular weight: 33638.11 Da
• Isoelectric Point: 8.2254

>NTDB_id=1090698 ACLKML_RS14370 WP_413283768.1 1472554..1473441(-) (pilD) [Vibrio sp. MA40-2]
MQLFDYYPWLYPTFIGIFGLIVGSFLNVVILRLPLMMQQQWKQDCIDTFPQLNLTNNTSFTTNNPKITLSTPRSHCPNCK
HPLRIVDNIPIVSWLLLKGKCHHCQQAISIRYPLIELLTAIMSIAIAVHFPFSFYSVALVFFTFALITATFIDFDTMLLP
DQITLPLTWFGIFIALINQSPVSLNDAVIGAIAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLFIIILL
SSIIGLLFGLIQLRLQKKDIGMQFPFGPYLAIAGWISLLWGDKIMYWYYSSMLSI

Nucleotide

• Length: 888 bp

>NTDB_id=1090698 ACLKML_RS14370 WP_413283768.1 1472554..1473441(-) (pilD) [Vibrio sp. MA40-2]
ATGCAATTATTTGACTATTACCCTTGGCTTTATCCTACTTTTATTGGCATTTTTGGACTCATTGTGGGCAGTTTTTTAAA
TGTTGTGATTCTTCGTCTGCCATTGATGATGCAACAACAGTGGAAACAAGATTGCATTGATACATTCCCACAACTCAACC
TAACAAACAATACCAGCTTTACAACTAATAACCCAAAGATAACCTTAAGTACACCTCGCTCTCATTGTCCTAATTGTAAA
CACCCCCTAAGAATAGTAGATAACATCCCCATTGTGAGTTGGTTGTTATTAAAAGGTAAATGCCATCATTGTCAGCAAGC
AATTAGTATTAGATATCCATTGATCGAGTTACTTACTGCCATAATGAGTATCGCTATTGCTGTTCATTTCCCTTTTAGTT
TTTACTCTGTTGCACTGGTCTTTTTTACATTTGCATTGATAACAGCCACATTTATTGATTTCGATACCATGCTACTTCCT
GATCAAATCACTTTGCCTTTAACTTGGTTTGGTATTTTTATTGCTCTCATCAATCAAAGCCCAGTATCTTTAAATGATGC
TGTTATTGGGGCTATTGCCGGTTACCTTTGTTTATGGAGCGTATATTGGCTATTCAAATTGTTAACAGGAAAAGAAGGCA
TGGGATATGGTGATTTTAAACTACTTGCAGCATTAGGTGCTTGGCTTGGATGGCAGCACCTTTTTATCATCATCTTATTG
TCCTCTATAATTGGTTTGCTGTTCGGCTTAATTCAATTACGCTTACAAAAAAAAGACATAGGCATGCAATTCCCATTTGG
CCCCTATTTAGCCATCGCGGGATGGATAAGTTTACTATGGGGAGATAAAATTATGTATTGGTATTATTCATCCATGTTGA
GCATATAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (142-250)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-130)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	65.993	100	0.664
pilD	Vibrio cholerae strain A1552	65.636	98.644	0.647
pilD	Acinetobacter nosocomialis M2	51.46	92.881	0.478
pilD	Acinetobacter baumannii D1279779	50.73	92.881	0.471
pilD	Neisseria gonorrhoeae MS11	47.955	91.186	0.437