Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ACLKML_RS13140 Genome accession   NZ_CP178628
Coordinates   1194782..1195414 (-) Length   210 a.a.
NCBI ID   WP_272132783.1    Uniprot ID   -
Organism   Vibrio sp. MA40-2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1189782..1200414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKML_RS13120 (ACLKML_13120) - 1191131..1192009 (+) 879 WP_413285685.1 NAD(P)-dependent oxidoreductase -
  ACLKML_RS13125 (ACLKML_13125) - 1192068..1192316 (-) 249 WP_413285880.1 DUF3624 domain-containing protein -
  ACLKML_RS13130 (ACLKML_13130) - 1192568..1192858 (+) 291 WP_413285686.1 co-chaperone GroES -
  ACLKML_RS13135 (ACLKML_13135) groL 1192928..1194577 (+) 1650 WP_413285687.1 chaperonin GroEL -
  ACLKML_RS13140 (ACLKML_13140) crp 1194782..1195414 (-) 633 WP_272132783.1 cAMP-activated global transcriptional regulator CRP Regulator
  ACLKML_RS13145 (ACLKML_13145) - 1195660..1196529 (-) 870 WP_413285688.1 phosphoribulokinase -
  ACLKML_RS13150 (ACLKML_13150) - 1196619..1196831 (-) 213 WP_413285689.1 YheU family protein -
  ACLKML_RS13155 (ACLKML_13155) - 1196839..1197816 (-) 978 WP_413285690.1 hydrolase -
  ACLKML_RS13160 (ACLKML_13160) - 1197932..1198405 (-) 474 WP_413285691.1 TIGR02444 family protein -
  ACLKML_RS13165 (ACLKML_13165) - 1198402..1200318 (-) 1917 WP_413285692.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23614.34 Da        Isoelectric Point: 7.4009

>NTDB_id=1090694 ACLKML_RS13140 WP_272132783.1 1194782..1195414(-) (crp) [Vibrio sp. MA40-2]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSSQMASRLQTTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=1090694 ACLKML_RS13140 WP_272132783.1 1194782..1195414(-) (crp) [Vibrio sp. MA40-2]
ATGGTTCTAGGTAAACCTCAAACCGATCCGACGTTAGAGTGGTTTCTTTCACACTGTCATATTCATAAATATCCATCAAA
GAGTACGCTTATCCACGCGGGTGAAAAAGCGGAAACTCTGTATTACATTGTGAAAGGCTCTGTGGCTGTGCTTATCAAGG
ATGAAGAAGGTAAAGAGATGATTCTTTCTTACCTTAACCAAGGTGACTTCATCGGTGAGCTAGGCCTTTTTGAAGAAGAC
CAAGAACGTACCGCATGGGTACGAGCTAAATCACCTTGTGAAGTTGCTGAAATTTCGTTTAAGAAATTCCGTCAGCTTAT
TCAAGTTAACCCAGATATTTTGATGCGTCTTTCGTCTCAAATGGCAAGTCGTCTACAAACGACAAGCCAAAAAGTAGGCG
ATTTGGCCTTCTTAGATGTGACTGGTCGTATTGCTCAAACACTTCTTAATTTAGCAAAACAACCTGATGCAATGACTCAC
CCTGATGGGATGCAGATCAAAATTACTCGTCAAGAGATTGGACAAATTGTTGGCTGTTCACGTGAGACAGTTGGACGTAT
TTTAAAAATGCTTGAAGAGCAGAACTTAATTTCTGCACACGGTAAAACTATCGTTGTTTACGGTACTCGCTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.143

100

0.971
  crp Haemophilus influenzae Rd KW20

74.51

97.143

0.724
  crp Acinetobacter baumannii D1279779

46.86

98.571

0.462

Multiple sequence alignment