Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACL66B_RS18390 Genome accession   NZ_CP178617
Coordinates   3531028..3531717 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain QXKL-3     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3526028..3536717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL66B_RS18355 (ACL66B_18355) flgN 3526208..3526690 (-) 483 WP_014481048.1 flagellar protein FlgN -
  ACL66B_RS18360 (ACL66B_18360) flgM 3526706..3526972 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACL66B_RS18365 (ACL66B_18365) yvyF 3527053..3527472 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  ACL66B_RS18370 (ACL66B_18370) comFC 3527546..3528268 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  ACL66B_RS18375 (ACL66B_18375) comFB 3528232..3528528 (-) 297 WP_003227989.1 late competence protein ComFB -
  ACL66B_RS18380 (ACL66B_18380) comFA 3528588..3529979 (-) 1392 WP_041850475.1 ATP-dependent helicase ComFA Machinery gene
  ACL66B_RS18385 (ACL66B_18385) fakBA 3530085..3530930 (-) 846 WP_003227986.1 DegV family protein -
  ACL66B_RS18390 (ACL66B_18390) degU 3531028..3531717 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACL66B_RS18395 (ACL66B_18395) degS 3531800..3532957 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  ACL66B_RS18400 (ACL66B_18400) yvyE 3533174..3533827 (+) 654 WP_003227979.1 YigZ family protein -
  ACL66B_RS18405 (ACL66B_18405) tagV 3533827..3535011 (+) 1185 WP_041850474.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  ACL66B_RS18410 (ACL66B_18410) tagO 3535084..3536160 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1090591 ACL66B_RS18390 WP_003219701.1 3531028..3531717(-) (degU) [Bacillus subtilis strain QXKL-3]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1090591 ACL66B_RS18390 WP_003219701.1 3531028..3531717(-) (degU) [Bacillus subtilis strain QXKL-3]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTTCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment