Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   ACKUFW_RS16815 Genome accession   NZ_CP178610
Coordinates   3420322..3421485 (-) Length   387 a.a.
NCBI ID   WP_003151385.1    Uniprot ID   -
Organism   Bacillus velezensis strain GUMHT p116     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3415322..3426485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKUFW_RS16785 (ACKUFW_16785) - 3415587..3416006 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  ACKUFW_RS16790 (ACKUFW_16790) comFC 3416080..3416769 (-) 690 WP_199445943.1 phosphoribosyltransferase family protein Machinery gene
  ACKUFW_RS16795 (ACKUFW_16795) - 3416775..3417059 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  ACKUFW_RS16800 (ACKUFW_16800) comFA 3417117..3418502 (-) 1386 WP_202735745.1 DEAD/DEAH box helicase Machinery gene
  ACKUFW_RS16805 (ACKUFW_16805) - 3418610..3419458 (-) 849 WP_071392365.1 DegV family protein -
  ACKUFW_RS16810 (ACKUFW_16810) degU 3419556..3420245 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACKUFW_RS16815 (ACKUFW_16815) degS 3420322..3421485 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  ACKUFW_RS16820 (ACKUFW_16820) - 3421708..3422355 (+) 648 WP_060657503.1 YigZ family protein -
  ACKUFW_RS16825 (ACKUFW_16825) - 3422360..3423535 (+) 1176 WP_071392366.1 LCP family protein -
  ACKUFW_RS16830 (ACKUFW_16830) - 3423625..3424701 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  ACKUFW_RS16835 (ACKUFW_16835) tuaH 3424834..3426030 (-) 1197 WP_071392367.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.82 Da        Isoelectric Point: 7.1378

>NTDB_id=1090506 ACKUFW_RS16815 WP_003151385.1 3420322..3421485(-) (degS) [Bacillus velezensis strain GUMHT p116]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENKRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=1090506 ACKUFW_RS16815 WP_003151385.1 3420322..3421485(-) (degS) [Bacillus velezensis strain GUMHT p116]
ATGAACAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TGTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGCTTAAGAATCATCGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTTCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACAAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATAACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTTATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.325

99.483

0.948

Multiple sequence alignment