Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACKUFW_RS16810 Genome accession   NZ_CP178610
Coordinates   3419556..3420245 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain GUMHT p116     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3414556..3425245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKUFW_RS16775 (ACKUFW_16775) - 3414754..3415236 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACKUFW_RS16780 (ACKUFW_16780) flgM 3415251..3415517 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACKUFW_RS16785 (ACKUFW_16785) - 3415587..3416006 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  ACKUFW_RS16790 (ACKUFW_16790) comFC 3416080..3416769 (-) 690 WP_199445943.1 phosphoribosyltransferase family protein Machinery gene
  ACKUFW_RS16795 (ACKUFW_16795) - 3416775..3417059 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  ACKUFW_RS16800 (ACKUFW_16800) comFA 3417117..3418502 (-) 1386 WP_202735745.1 DEAD/DEAH box helicase Machinery gene
  ACKUFW_RS16805 (ACKUFW_16805) - 3418610..3419458 (-) 849 WP_071392365.1 DegV family protein -
  ACKUFW_RS16810 (ACKUFW_16810) degU 3419556..3420245 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACKUFW_RS16815 (ACKUFW_16815) degS 3420322..3421485 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  ACKUFW_RS16820 (ACKUFW_16820) - 3421708..3422355 (+) 648 WP_060657503.1 YigZ family protein -
  ACKUFW_RS16825 (ACKUFW_16825) - 3422360..3423535 (+) 1176 WP_071392366.1 LCP family protein -
  ACKUFW_RS16830 (ACKUFW_16830) - 3423625..3424701 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1090505 ACKUFW_RS16810 WP_003219701.1 3419556..3420245(-) (degU) [Bacillus velezensis strain GUMHT p116]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1090505 ACKUFW_RS16810 WP_003219701.1 3419556..3420245(-) (degU) [Bacillus velezensis strain GUMHT p116]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment