Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACKUFW_RS16800 Genome accession   NZ_CP178610
Coordinates   3417117..3418502 (-) Length   461 a.a.
NCBI ID   WP_202735745.1    Uniprot ID   -
Organism   Bacillus velezensis strain GUMHT p116     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3412117..3423502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKUFW_RS16765 (ACKUFW_16765) flgL 3412292..3413209 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  ACKUFW_RS16770 (ACKUFW_16770) flgK 3413221..3414738 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  ACKUFW_RS16775 (ACKUFW_16775) - 3414754..3415236 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACKUFW_RS16780 (ACKUFW_16780) flgM 3415251..3415517 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACKUFW_RS16785 (ACKUFW_16785) - 3415587..3416006 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  ACKUFW_RS16790 (ACKUFW_16790) comFC 3416080..3416769 (-) 690 WP_199445943.1 phosphoribosyltransferase family protein Machinery gene
  ACKUFW_RS16795 (ACKUFW_16795) - 3416775..3417059 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  ACKUFW_RS16800 (ACKUFW_16800) comFA 3417117..3418502 (-) 1386 WP_202735745.1 DEAD/DEAH box helicase Machinery gene
  ACKUFW_RS16805 (ACKUFW_16805) - 3418610..3419458 (-) 849 WP_071392365.1 DegV family protein -
  ACKUFW_RS16810 (ACKUFW_16810) degU 3419556..3420245 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACKUFW_RS16815 (ACKUFW_16815) degS 3420322..3421485 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  ACKUFW_RS16820 (ACKUFW_16820) - 3421708..3422355 (+) 648 WP_060657503.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52523.81 Da        Isoelectric Point: 9.9983

>NTDB_id=1090504 ACKUFW_RS16800 WP_202735745.1 3417117..3418502(-) (comFA) [Bacillus velezensis strain GUMHT p116]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRINRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLKRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQELNIRAEGVHAEDTFRKDKVKRFRDGLLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1090504 ACKUFW_RS16800 WP_202735745.1 3417117..3418502(-) (comFA) [Bacillus velezensis strain GUMHT p116]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAATCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGATGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCATCAGCTGAAGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCTCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGGAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCTGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGAGTTACCGTACCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.826

99.783

0.627

Multiple sequence alignment