Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ACJQW4_RS10990 Genome accession   NZ_CP178606
Coordinates   2315447..2316154 (-) Length   235 a.a.
NCBI ID   WP_241624348.1    Uniprot ID   -
Organism   Acinetobacter sp. A7.4     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2310447..2321154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJQW4_RS10970 (ACJQW4_10970) - 2311446..2312765 (+) 1320 WP_241624340.1 adenylosuccinate synthase -
  ACJQW4_RS10975 (ACJQW4_10975) - 2312934..2313242 (+) 309 WP_241624342.1 phosphoethanolamine transferase domain-containing protein -
  ACJQW4_RS10980 (ACJQW4_10980) - 2313355..2314131 (+) 777 WP_241624344.1 M48 family metallopeptidase -
  ACJQW4_RS10985 (ACJQW4_10985) - 2314244..2315293 (-) 1050 WP_241624346.1 NADP(H)-dependent aldo-keto reductase -
  ACJQW4_RS10990 (ACJQW4_10990) crp 2315447..2316154 (-) 708 WP_241624348.1 cAMP-activated global transcriptional regulator CRP Regulator
  ACJQW4_RS10995 (ACJQW4_10995) - 2316303..2316725 (+) 423 WP_142768353.1 OsmC family protein -
  ACJQW4_RS11000 (ACJQW4_11000) clpB 2317009..2319588 (+) 2580 WP_241624350.1 ATP-dependent chaperone ClpB -
  ACJQW4_RS11005 (ACJQW4_11005) - 2319800..2321089 (+) 1290 WP_241624352.1 DUF945 family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26591.19 Da        Isoelectric Point: 4.6016

>NTDB_id=1090417 ACJQW4_RS10990 WP_241624348.1 2315447..2316154(-) (crp) [Acinetobacter sp. A7.4]
MTSNFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFESNPQRTAEVRTRDVCEIAEITYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDVSLEQTNSEEDFEDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=1090417 ACJQW4_RS10990 WP_241624348.1 2315447..2316154(-) (crp) [Acinetobacter sp. A7.4]
ATGACTTCAAACTTTTCACAGCTAAGTACTGATGCGCTATCGCCAGGTCAATTACCTGAATCAGTGAAGGCACTATTAAA
ACGAGCATATATAAACCGTTACCCAAAACGTACAACTATTGTCGATGCGGGCACAGAATCAAAATCACTTTATTTGATTT
TAAAAGGGTCAGTTTCTATTATTTTACGTGAAGATGATGAGCGTGAAATTGTAGTTGCGTATTTGAATCCAGGTGACTTC
TTTGGGGAAATGGGACTATTCGAATCAAATCCACAACGTACTGCTGAAGTTCGTACTCGTGATGTTTGTGAGATTGCAGA
AATCACTTACGAAAACTTCCATGAGCTAAGCAAACAATATCCAGACCTAAGCTATGCAGTTTTCGCTCAATTGGTTCGTC
GCTTAAAAAATACCACCCGTAAAGTTACTGACCTTGCCTTTATCGACGTTTCTGGTCGTATTGCACGCTGCTTGATTGAT
CTTTCTGCACAGCCTGAAGCAATGATCTTACCAAACGGTCGTCAAATTCGTATCACCCGCCAAGAAATTGGTCGTATCGT
GGGTTGCTCTCGTGAAATGGTGGGTCGTGTTCTTAAAACACTTGAAGACCAAGGTATGATTCAAACTGATGGTAAAGCCA
TTCTAATTTTTGATGTTTCTTTGGAGCAAACAAACTCTGAGGAAGACTTCGAAGACGATGAAGAATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-219)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

93.191

100

0.932
  crp Vibrio cholerae strain A1552

46.829

87.234

0.409
  crp Haemophilus influenzae Rd KW20

48.187

82.128

0.396

Multiple sequence alignment